Gene Apar_0738 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0738 
Symbol 
ID8413602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp818553 
End bp820397 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content49% 
IMG OID645022319 
ProductABC transporter related 
Protein accessionYP_003179758 
Protein GI257784541 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGATA TGTATTCCGG CGGAAGCACC TCTGCTATCA CATCCAGCGC ACCTGAGCAT 
GGCAAAGGTG GCTCGGCAGA CGTTATCTCT ATGTCCGCGG CTGAAGTTAC GCGCCGACTA
GCTGCATGGA TTTCTCCACA CGGGGGATTT CTTGTTTTAG CAGCAACCTC GTCTATTGCA
ACCGTGCTGC TACAACTTTG GGTGCCCATC ATTGTTGGTA GCGCCATTGA CCAGCTCATC
AAACTAGTGC AAAGCGGCGA GGCAGCACTT TTGCCAACGC TCGCTCAGCT CTCACTGGTA
GTTTTGCTTG CAAGTGCAAC GCAGTGGCTT GCTTCCTGGT CAACTAACAA GCTCACCTAT
CTGGTCACAC GTGACCTTAG AGACGCGGCT CATTCCAAGG TGGCAAACCT GCCGCTCTCG
TATATTGATA CACATTCTCA GGGAGATTTG CTCTCTAGGG TAGTAAACGA TGTGGATCAG
CTTGGCGACG GCCTCCAGCA GGGCCTCACG CAGTTCCTTA CGGGCGTGGT AACCATTATT
GGAACCTTAT GCTTCATGTT CTATATGTCG GTCCCTATGG GCCTTGTAGT TGCTCTGGCT
ACGCCGCTCT CTATTATTGC AGCGGCCTTG GTTACCAAGT ATGCAAGCTC TTCTTTTGGC
AAGCAGCAAG GTTACCAGGG CCAGCTTAGC GGATACGCAG AAGAGATGGT CTCTAACCAG
AAACTTATTA CCGCATTTGC TCACAAGGAC GCCGTTATTG AGCAGTTTGA AGCTATTAAC
GAGAAACTCC GTGTAGTAGG AGAGCGTGCA CAATTTGCAT CATCACTTTC TAATCCCTCT
ACGCGTTTGG TAAATAACTT CATTTACGCT CTGGTAGCTG GTCTTGGCTG CATTTGCGTA
CTAACGGGCA TTCCTTCTCC GCTTACCATC GGTCAGGTAC AGAGCTTTCT CTCATACGCT
AACCAGTACA TGAAGCCTTT TAACGCAATA TCTGCAGTTG TTACGCAGGT CCAAACCGCC
TACGCAAGTG CTCGTCGAGT CTTTGATCTT CTCGACGCAA AAGAAATCAA ACCTGATCCA
GCCGACGCTG AAGTCATCCA GGATCCACAG GGCTCCATTG AATTTGACGA CGTAGCGTTC
TCCTACGACG TTAAGCACCC ATTGCTCAAC CATATTTCAT TCAAGGCAGA ACCTGGTCAG
AAGATTGCTC TTGTTGGTCC AACCGGCTGC GGAAAGACCA CCCTTATTAA CCTGCTACTT
AGATTCTATA GCATTGATTC TGGTGCAATT TATGTAGACG GTCATAACAC GCAAAAGCTC
ACGCGAGCTT CGCTCAGAGA ACAGTTTGGC ATGGTGCTGC AGGATACCTG GCTCTTTAAG
GGAACCATCA AAGAAAACAT CCGTTATGCA AAGCCTGATG CTACTGATGA AGAGGTTATT
GCCGCAGCTC AAAAGGCTCA GGCTCACCAG TTTATCCAAC AACTTCCACA AGGTTATGAC
ACTATGGTGG GAGAGTCTGG CGGATCCCTT TCTCAGGGCC AGCAACAACT TCTTTGCATT
GCTCGCGTTA TGCTAGCTAA TCCACCTATT CTGCTTCTGG ATGAAGCAAC CTCAAGCATT
GATACACGTA CGGAGCAGCT GGTACAGAAG GCATTTGACA CCATCATGAA TGGCAGAACT
TCGCTGGTTG TTGCCCATAG ACTTTCTACC ATCCAAGGAG CAGACTGCAT TCTTGTCCTT
AAGGATGGCT CAATTCTTGA GCGTGGTACT CACGATGAGC TTTTGGCCAA AGGTGGCTTC
TATGCCAAAC TATACGAGAG CCAGTTTGAG GGTACTAACG CTTAA
 
Protein sequence
MADMYSGGST SAITSSAPEH GKGGSADVIS MSAAEVTRRL AAWISPHGGF LVLAATSSIA 
TVLLQLWVPI IVGSAIDQLI KLVQSGEAAL LPTLAQLSLV VLLASATQWL ASWSTNKLTY
LVTRDLRDAA HSKVANLPLS YIDTHSQGDL LSRVVNDVDQ LGDGLQQGLT QFLTGVVTII
GTLCFMFYMS VPMGLVVALA TPLSIIAAAL VTKYASSSFG KQQGYQGQLS GYAEEMVSNQ
KLITAFAHKD AVIEQFEAIN EKLRVVGERA QFASSLSNPS TRLVNNFIYA LVAGLGCICV
LTGIPSPLTI GQVQSFLSYA NQYMKPFNAI SAVVTQVQTA YASARRVFDL LDAKEIKPDP
ADAEVIQDPQ GSIEFDDVAF SYDVKHPLLN HISFKAEPGQ KIALVGPTGC GKTTLINLLL
RFYSIDSGAI YVDGHNTQKL TRASLREQFG MVLQDTWLFK GTIKENIRYA KPDATDEEVI
AAAQKAQAHQ FIQQLPQGYD TMVGESGGSL SQGQQQLLCI ARVMLANPPI LLLDEATSSI
DTRTEQLVQK AFDTIMNGRT SLVVAHRLST IQGADCILVL KDGSILERGT HDELLAKGGF
YAKLYESQFE GTNA