| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0726 |
|---|
| Symbol | |
|---|
| ID | 8413590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 804820 |
|---|
| End bp | 805674 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022307 |
|---|
| Product | hydroxymethylbutenyl pyrophosphate reductase |
|---|
| Protein accession | YP_003179746 |
|---|
| Protein GI | 257784529 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.605829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0837789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTACTA TTAAAATTGC CGATGAAGCA GGCGCTTGTT ACGGTGTAGA AAGAGCTCTT
CAGATGGTCC AGCAGGCTGT CAAAGATGCT CATGCACCTG TGCGCACACT TGGTCCACTT
ATTCATAATC CTCGCGTTGT TACTTCCCTT AAAGATCAAG GCGTAGAGGT AGTTGATTTT
GCTTCTGAAG CTGCAGGAAG TGCTCTGCTA TTGCGTACCC ATGGTGTAAC GCCTCAAGAG
GAACAGATTG CCAAGGACGG TTGTGTTGAC GTGTTAGATG CAACCTGTCC GTTTGTAAAG
AAGGCTCACC GAGCAGCAGA ACTTCTCGCC AAGCAAGGAT ATGCCGTATA TGTGGTGGGA
GAGTCCGGAC ATCCCGAGGT AGAGGCAACA CTGGCTCACG TGCCAGGATC TTTGGCTATC
GATTCTGTGG AAGAGGTTGC CGCTCAGGCA GACGCCATGA GAGTCGCAAA AAAAGTTGGT
CTGGTGGTAC AAACTACCAT GAGTGCTGCA AAGCTTTCTG AGGTGGTTAA TGCGGTACTT
CCGCTTGTTG ACGAGTTGCG CGTCATGAAT ACCATCTGTG AAGCTACTGC GGGCCATCAA
GACTCTTGCA TGAGGCTTGC AAAAGAATCT GACGTGATGA TTATTATTGG TGGCAGAATT
TCTGCTAACA CTACCCGTTT GGCAGAGATT TCTAAGCTCT ATTGCCCCGC AACCTATCAC
ATTGAAGGTA CAGATGAGCT GCAGGCTTCT TGGTTTGAAG GGGCTGAGCA TATTGGCATT
ACTGCTGGTG CTTCTACGCC GGAAGCTCAT ATCAATGCAG TTAAATTGGC TATTGAAGAA
ATCGTAGGCG CATAA
|
|---|
| Protein sequence | MPTIKIADEA GACYGVERAL QMVQQAVKDA HAPVRTLGPL IHNPRVVTSL KDQGVEVVDF
ASEAAGSALL LRTHGVTPQE EQIAKDGCVD VLDATCPFVK KAHRAAELLA KQGYAVYVVG
ESGHPEVEAT LAHVPGSLAI DSVEEVAAQA DAMRVAKKVG LVVQTTMSAA KLSEVVNAVL
PLVDELRVMN TICEATAGHQ DSCMRLAKES DVMIIIGGRI SANTTRLAEI SKLYCPATYH
IEGTDELQAS WFEGAEHIGI TAGASTPEAH INAVKLAIEE IVGA
|
|---|
| |