Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0720 |
Symbol | |
ID | 8413584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 799379 |
End bp | 800059 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 645022301 |
Product | peptidase M50 |
Protein accession | YP_003179740 |
Protein GI | 257784523 |
COG category | [R] General function prediction only |
COG ID | [COG1994] Zn-dependent proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.089532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0115297 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCAACTG CTTTAACATC AGTTTCATCA CTTTTGACAA CGCTTGCTGA ATTTGCGCTG GTAATTTTTG CTATCGTGAT TCATGAGGTT GCACATGGCT TTGTGGCATA TAAATGTGGT GATTCTACGG CAAAGATTTC GGGTCGTTTG ACACTCAATC CATTGGCTCA CATTGACTTG TTTGGTACAG TCCTTCTGCC GCTTATGCTT GTTTTAATGG GTGGACCTAG CTTTGGATAT GCAAAACCCG TTCCATATAA TCCCAATAAT CTTAAAAATC GTCGCCGTGA CGAGATTCTA GTAGCACTTG CTGGTCCAAG TTCTAACATC TTACAGGCGT TTCTTGGTGC GCTTCTGTTG CGCCTACTCA ATGCAGCAAG TAATGCTTTT GGTGCATTCT TGAATCCACT GGTGATGTAC TACGTGTCAT CATTAGTTGT TTTCTATATC CAGATTAACG TAAGTCTGGC TGTTTTCAAT ATGCTGCCTA TTCCGCCTTT GGACGGCTCT AAGCTGCTGC TTTATTTTTT GGGTGAGAAA AACCGTCAAA AGTTCTATGC CATTGAACCC TATTGCATGA TTGCTGTTGT TGGTTTGATG TTCTTTGCAC CTGGCTTTTT CTCATCCATC ATCGGTGGCA TATCTAACGT CATTTTGAGT CTACTTGCGA GAATCATCTA A
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Protein sequence | MPTALTSVSS LLTTLAEFAL VIFAIVIHEV AHGFVAYKCG DSTAKISGRL TLNPLAHIDL FGTVLLPLML VLMGGPSFGY AKPVPYNPNN LKNRRRDEIL VALAGPSSNI LQAFLGALLL RLLNAASNAF GAFLNPLVMY YVSSLVVFYI QINVSLAVFN MLPIPPLDGS KLLLYFLGEK NRQKFYAIEP YCMIAVVGLM FFAPGFFSSI IGGISNVILS LLARII
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