| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0714 |
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| Symbol | |
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| ID | 8413575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 792720 |
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| End bp | 794417 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022292 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_003179734 |
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| Protein GI | 257784517 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000812251 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTTCTT TGTATGCACC AACACTTAAA GAAGACCCAG CTGAGGCTGT ACTTGCAAGT
CACCGCCTGC TCCTTCGTGC TGGCATGATT AGAAAAACTG CCGCCGGTCT TTATTCTTAT
TTGCCACTTG CATGGCGCTC TCTTTTAAAG ATTGAGGCTA TCATTCGCGA TGAGATGGAC
GGTATTGGTG CTCAGGAGAT TCTTGTTCCC ATTATGACTC CTGCTGAGCT CTGGGAAGAG
TCAGGTCGTT GGGATGTCTA CGGCGATGAG CTGATGCGCA TGCACGATCG TCATGATCGT
CAGTTTGCCC TTGGCCCAAC TCATGAGGAA ACCTTCACAG ATCTTATTAG AAATGAGCTC
AAAAGTTATA AACAGCTTCC AGTAACGCTC TATCAGATTC AGGATAAGTT CCGTGATGAG
CGCCGCCCAC GCTTTGGTCT TATGCGTGGC CGCGAGTTTA TTATGAAAGA TGGTTATTCC
TTCTCGGCAA ATCAAGAGTC ACTGCAAGAG TGTTATGACC AGGAAAAGGT TGCTTACCAG
AACGTTTGTG ACCGTACGCG TCTTAGAGCT TTGCAGGTAG TTGCAGACTC TGGTCAGATT
GGTGGAGACA CTTCTGTTGA GTTTATGGCG CTGGCAGAGG CTGGTGAGGC AAGTCTGGTT
TACTGCGATT GCGGTTATGC TGCAGATACT GAGGCAGCTG CTGCGAAGAT TAAGGTAGAG
GAGCGTGAGC CTGGTCAGAT GTGTGAGATT CATACCCCTG ATATTGGCTC CATTGATGAC
GTCGCTGAGT TCCTCCACGT TTCACCTGCA GCAACACGCA AGGCTCTTGC GCTTGTTGAT
GGAAACGGTA AGCCAGTTGT GTGCTTTGTA CCAGGTACAC ATGAGCTCAA CGAGGTTAAG
GCCGAGCACG CTTTTGGTGA GTACCACATG ATGACCGATG AAGAGCTCGA TGAGTTTGGC
CTTATCAAGG GCTTTATTGG ACCTGTTGGT TTACCTGAGG GTATTCGTGT TGTCGGAGAT
CTTTCTCTTG AGGACACTCA GTGGTGGCTC TGCGGTGCTA ATAAGGCAGA CTACCACCTT
GATCACGTTG AGCTTGGTCG CGATTTTGAG ATTAACGAGT GGAAGGATCT TGTCACTTCT
CAGGAGGGCG ACATTTGCCC TGAGTGTGGC CTTCCTTTAC ATGCCGCTCG TGGTATTGAG
GTTGGTCAGG TATTCCAGCT TGGCACTAAA TACTCTTCAG CACTTAATGC TACCTTCACC
GATGAAAACG GCCAGGACAA GCCTCTGGTT ATGGGTTGTT ATGGCATTGG TGTTTCCAGA
CTTCTTGCCG CTGTCGTTGA GCAGTACAAT GACGAGAAGG GCATCAAGTG GCCAGTTTCT
GTTGCTCCTT ATGAAGTTTC TGTTCTTTGC CTTTCTAACA AAGACCCAGA AATCTGGGAC
GCAGCAGGTG CAGTAGCTGA CGCCTGTGTT GCTGCTGGTC TTGAGACTGT TGTCGACGAT
CGCGTAGAGC GTCCAGGCGT GAAGTTTGCA GACGCTGATC TTATTGGTTT CCCGTGGCAG
GTTATTGTGG GCAAGAAAGG CGTTACAAAC GGCATCGCAG AAGTTAAAGA GCGAGCTACC
GGTGAGCGCT TTGAGGTTGC CCTTGATGAA GTTGCTTCTT GGTTGGCAGA AAAGATTCTT
CCAGAGCGTG AGCTCTAA
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| Protein sequence | MSSLYAPTLK EDPAEAVLAS HRLLLRAGMI RKTAAGLYSY LPLAWRSLLK IEAIIRDEMD
GIGAQEILVP IMTPAELWEE SGRWDVYGDE LMRMHDRHDR QFALGPTHEE TFTDLIRNEL
KSYKQLPVTL YQIQDKFRDE RRPRFGLMRG REFIMKDGYS FSANQESLQE CYDQEKVAYQ
NVCDRTRLRA LQVVADSGQI GGDTSVEFMA LAEAGEASLV YCDCGYAADT EAAAAKIKVE
EREPGQMCEI HTPDIGSIDD VAEFLHVSPA ATRKALALVD GNGKPVVCFV PGTHELNEVK
AEHAFGEYHM MTDEELDEFG LIKGFIGPVG LPEGIRVVGD LSLEDTQWWL CGANKADYHL
DHVELGRDFE INEWKDLVTS QEGDICPECG LPLHAARGIE VGQVFQLGTK YSSALNATFT
DENGQDKPLV MGCYGIGVSR LLAAVVEQYN DEKGIKWPVS VAPYEVSVLC LSNKDPEIWD
AAGAVADACV AAGLETVVDD RVERPGVKFA DADLIGFPWQ VIVGKKGVTN GIAEVKERAT
GERFEVALDE VASWLAEKIL PEREL
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