Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0713 |
Symbol | |
ID | 8413574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 791588 |
End bp | 792661 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645022291 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_003179733 |
Protein GI | 257784516 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000179316 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTGAGC TTGCTCGCAC AAAAACCCAT CCCGTAATGG TTGGCCCCGT TCAGGTTGGT GGAGGTGCTC CCGTTTCTGT TCAGTCAATG TGTACTACCA AAACAGATGA TGCAGATGCA ACGCTTCATC AGATCAAAAA GCTTGCAGAG GCTGGTTGTG AGATTATTCG TGTAGCAATT CCTGACGCAA AAGCACTTAA TGGTTTTGAA GAAATCTGTA AATACTCGCC ACTGCCTGTT GTTGCCGATA TCCACTTTGA CTATAAACTT GCGCTCGAGG CTGCAAAGAG AGGTGCAGCA GCACTTCGTA TTAATCCAGG CAATATTGGT TCTATGGAGC GCGTTGACGC TGTTATTGAT GCAGCTAAAG AAGCTCATAT TCCTATCAGA ATTGGCGTTA ATGCAGGGTC TCTTGCTAAG GAATTTGATA CAAGACAAGA CATGACCCTT GTTGAGAAAC TTGTGGCATC GTCAAAGTCA TTTGTAGAAC ACTTTTCTTC TCGTGGTTTT GACAATATTG TCTTGTCAGC AAAAGCACAC GACGTTCCAA CTACGCTTGC TGTGTATCGA GCACTTTCCA AAGAGCTCCC ACAGATTCCT CTGCACGTAG GTGTTACGGA GGCTGGCGCG TTGAGGCAGG GAACTGTAAA GAATTCTGCT GCTGTTGGTA TTTTGCTAGA AAGTGGTATT GGCGATACTA TGCGTCTCTC TTTGACAGCT GATCCGATAG AAGAAGTTCA TGTGGCGTGG GAACTTCTTG CAGCTCTTGG TATGCGTCGC ATTAAACCAG AGCTTGTGAG CTGCCCTACA TGTGGCCGAT GTGGTGTTGA CATGATTCCT ATTGCAGAAG AAGTTACTAA GCGCCTTGAT GGTGTTCGTG CTCCAATTTC TGTTGCTGTA ATGGGATGCG TTGTTAATGG TCCTGGTGAA GCTAAGGGTG TTGACCTTGG CGTTGCCTGT GGCAAAGGCC AGGCTGTTTT GTTCGAAAAC GGCAATCCTA TTAGAAAAGT TCCTGAAGAT AAAATTGTTG ATGAGTTATT CACTGAAATT GAGAATCGTT TTGGCAAAAA ATAA
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Protein sequence | MSELARTKTH PVMVGPVQVG GGAPVSVQSM CTTKTDDADA TLHQIKKLAE AGCEIIRVAI PDAKALNGFE EICKYSPLPV VADIHFDYKL ALEAAKRGAA ALRINPGNIG SMERVDAVID AAKEAHIPIR IGVNAGSLAK EFDTRQDMTL VEKLVASSKS FVEHFSSRGF DNIVLSAKAH DVPTTLAVYR ALSKELPQIP LHVGVTEAGA LRQGTVKNSA AVGILLESGI GDTMRLSLTA DPIEEVHVAW ELLAALGMRR IKPELVSCPT CGRCGVDMIP IAEEVTKRLD GVRAPISVAV MGCVVNGPGE AKGVDLGVAC GKGQAVLFEN GNPIRKVPED KIVDELFTEI ENRFGKK
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