| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0711 |
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| Symbol | |
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| ID | 8413572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 789014 |
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| End bp | 790201 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645022289 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_003179731 |
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| Protein GI | 257784514 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0829763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000673291 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAGCATTT TTGAAGATAC TGCGCCTCAT GCTGTTCGGC ATGAGCCTCT ACGCGTTGCT
ATTCTTGGAG CTTCAGGTTC TGTGGGTATG CAAACGCTTG ATGTATGTCG TCATTTTCCG
CAAAAGATTG AGGTAGTTGC ACTTGCAGTG CGCTCGTCGG TAGAGTTTGC TGTGAAGGCA
GCAAATGAGT TCAACTGCAA ATACGTTGCT TTTGCTGACG AAAGTGTCAA AGACAACGGG
CTTCTCGATG TACTGCCACA AGGCTGCGAA ACAAGCTTTG GTTCCAAAGC TGTTCAAGCG
CTTGCGGAGC TGGACGAGGT TGACTGTGTA GTTAATGCAG TGGTGGGAGA GGCTGGTATT
TACGCTGGTC TAGCTGCTGT TAAGGCTGGT AAAGTGCTGG CATACGCTAA CAAGGAGTCA
ATTGTCGTTG GCGGAGACCT TTTGATGCCT CTGGTTAAAC CTGGCCAGCT TATTCCTGTT
GATTCTGAGC ACAGCGCCAT CTTCCAGTGT CTCATTGGCG AGAATCCCGC TGATATCCAG
AGGATTTGGC TTACCTGTTC TGGTGGTCCG TTCTTCGGAC GCACTAGGGA AGAGCTGGTG
CATGTTTCGG CTGACGACGC TTTGGCACAT CCAACTTGGA AGATGGGTGC AAAGATTACT
ATTGACTGCG CCACGTTGAT GAATAAGGGT CTTGAGCTCA TTGAGGCTCA TCATCTCTTT
GATATTCCTA TGGATAAGCT TGAGGTTCTG GTACATCGTC AGAGCCGCAT TCACTCCATG
GTTGAGTTTG TGGACGGCTC TGTTAAGGCA CAACTGGGAG CTTCTGATAT GAGGCTGCCT
ATCCAGTTTG CTCTGAGCTA TCCTCATCGC TGGCCAGCAA TTTCTAAGCC GGTAGAGTGG
CAAGAGACGA CTCCTCTTAC AGGAGATTAT GCTGACGAGA AGACCTTTGG ATGCCTTGCG
CTTGCTCGTC ATGCGGGTAC TGTTGGCGGA ACGCTGCCGT GTATTATGAA CGCAGCAAAT
GAAGTTGCTA ACTATGCATT TAGACAAGGA AGATGTTCAT TTCTTGATAT TGAGGCTATT
GTTGCAAAGA CTATGAATGC CTCTGAAGTT CAAAGGGTAG AAGACCTTCA ACAGTTGACG
CTTGTAGACG CACAAGCACG AGCTTTAGCT CGTTCTTTTG TGGGATAG
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| Protein sequence | MSIFEDTAPH AVRHEPLRVA ILGASGSVGM QTLDVCRHFP QKIEVVALAV RSSVEFAVKA
ANEFNCKYVA FADESVKDNG LLDVLPQGCE TSFGSKAVQA LAELDEVDCV VNAVVGEAGI
YAGLAAVKAG KVLAYANKES IVVGGDLLMP LVKPGQLIPV DSEHSAIFQC LIGENPADIQ
RIWLTCSGGP FFGRTREELV HVSADDALAH PTWKMGAKIT IDCATLMNKG LELIEAHHLF
DIPMDKLEVL VHRQSRIHSM VEFVDGSVKA QLGASDMRLP IQFALSYPHR WPAISKPVEW
QETTPLTGDY ADEKTFGCLA LARHAGTVGG TLPCIMNAAN EVANYAFRQG RCSFLDIEAI
VAKTMNASEV QRVEDLQQLT LVDAQARALA RSFVG
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