| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0703 |
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| Symbol | |
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| ID | 8413564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 781610 |
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| End bp | 782944 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 645022281 |
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| Product | gid protein |
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| Protein accession | YP_003179723 |
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| Protein GI | 257784506 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000569551 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000038791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCACAAA AAGTTACTGT GGTAGGTGCT GGTTTAGCTG GAAGCGAATG TGCCTTACAG
CTTGCTTCTC GTGGTATTTC TGTTGAGCTA ATAGAGCAGC GCCCCGTTGT TTCTTCTCCA
GCACATCACA CAGATATGTT TGCTGAACTG GTATGTTCTA ACTCTTTGAA ATCTACCAAG
GAAGATTCTG CGGCTGGAAT TTTAAAGTCT GAGCTTAAAA AGATGGGAAG CTTTCTACTT
TCTCTTGCAG AAGAAAACTC AGTTCCTGCA GGTGGCGCGC TTGCGGTGAA TAGAGAAGAG
TTTTCAAGGG CGGTTACTGA ACAGATTAGA AATCACCCAA ACATCTCTGT TACTCATGCA
GAGGTAACAG AGCTTTCGGA AGAACCAACA ATTATTGCTG CAGGACCACT GTGTTCCGAT
AGGTTATATG AGGCAATTTC TGAGCGCGTT GGAACCAACA GGATGTCGTT TTTTGATGCA
GCGGCGCCTA TTGTATCTGA AGAATCAATT GACCGTTCAA TTGTATTCTC TCAATCTCGT
TATGATGATT TGGGAATTGG CGATTATTTC AATTGTCCTA TGAATAAAGA GGAATATGAC
ACTTTTGTAG ATGAGTTACT TTCTGCTAAA CGTGTTATTG GCCATGATTT TGAGCAGTCT
GATTTGTTCC AAGCATGCCA ACCTATTGAG GAAGTTGCAC GAACGGGACA TGATTCCATC
AGGTTTGGAG CTCTAAAACC CGTGGGACTT ATTGATCCAC GAACAGGTAA ACGACCCTGG
GCGGCAGTTC AGCTTCGTGC AGAAAATACA GCTAAAACTG CATTTAATCT AGTGGGTTTT
CAGACAAACC TTACGTGGGG AGAGCAGAAA CGTGTATTTA CGCTTATCCC AGGATTAGAG
AACGCCGAGT TTGTTCGCTA TGGTGTCATG CACAGGAACT CTTTTGTCGA TTCTCCTCAT
GCGCTTGACG GCTCGTTTGG AATTCCAGGA ACTTCTATTA TTCTTGCGGG TCAAATTACA
GGTACAGAAG GCTATGTTGA AGCTATTGCT TCAGGCTTGC TTGCAGCGTT AAATATGTAT
GCACGTCTGT CAGGCAAGAA GACGTTTAAA CTTCCTTTGA CAACCTCGCT TGGTTCTCTT
GTCGGTTATG CAACAAATCC AAAAACCAAA GATTATCAGC CTATGCATGT TAATTTTGGA
ATTTTTGAGC CTTTGGACGA ACATATTAAA AGAAAAGATG AACGTCGTCA GAAAATGATG
GAGCGTGCTC ATAAAGATTT TGATGACTAT ATTGCTTCTC GCCAGGAGCT TTTTGATTGC
GTAAAGCGTG ATTAA
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| Protein sequence | MSQKVTVVGA GLAGSECALQ LASRGISVEL IEQRPVVSSP AHHTDMFAEL VCSNSLKSTK
EDSAAGILKS ELKKMGSFLL SLAEENSVPA GGALAVNREE FSRAVTEQIR NHPNISVTHA
EVTELSEEPT IIAAGPLCSD RLYEAISERV GTNRMSFFDA AAPIVSEESI DRSIVFSQSR
YDDLGIGDYF NCPMNKEEYD TFVDELLSAK RVIGHDFEQS DLFQACQPIE EVARTGHDSI
RFGALKPVGL IDPRTGKRPW AAVQLRAENT AKTAFNLVGF QTNLTWGEQK RVFTLIPGLE
NAEFVRYGVM HRNSFVDSPH ALDGSFGIPG TSIILAGQIT GTEGYVEAIA SGLLAALNMY
ARLSGKKTFK LPLTTSLGSL VGYATNPKTK DYQPMHVNFG IFEPLDEHIK RKDERRQKMM
ERAHKDFDDY IASRQELFDC VKRD
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