| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0656 |
|---|
| Symbol | |
|---|
| ID | 8413516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 731785 |
|---|
| End bp | 733941 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022233 |
|---|
| Product | formate acetyltransferase |
|---|
| Protein accession | YP_003179676 |
|---|
| Protein GI | 257784459 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0887776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAAA CACCAGCACA GGAGGCTTGG GACGGCTTTG TCGGTGGTAA CTGGCAAAAA
GCAATTGACG TCCGAGACTT CATCCAGAGG AATTACACCC CTTACGATGG TGATGATTCC
TTCCTCGCTG GTCCAACTGA AGCTACTACA AAGCTTTGGG CGGATGTTAT GGATCTTTTT
GCTCAAGAAA CCGCAAATGG TGGCGTACTT GATATGGATA CCAAGCTGGT TTCCACTATC
ACTTCCCACG AGGCTGGCTA CATTGAGAAG CCACTTGAGC AGATTGTCGG CCTTCAAACG
GACAAGCCAC TTAAGCGCGC CCTTATGGTA GACGGTGGCA TTCGTATGGC AATGGCTGCC
TGCAAGGCAT ATGGATACGA GGTTGACCCA GAGATTGTTA ACTTCTACAC CTATCGTCGC
AAGACTCACA ACGCTGGCGT TTTTGATGTC TATACCGAGG AAATGCGTAA ATGCCGTCAC
TCCCACATCA TCACTGGTCT GCCTGACGCA TATGGCCGTG GCCGCATCAT CGGCGATTAT
CGTCGTGTTG CACTTTACGG CGTTGATGCT CTTATTGCAG ACAAGACAAA TCAGAAAAAT
GGCACCGGCT CCATCATGGA CGAGAAGACC ATTCGTCATC GCGAAGAGCT CTCTGAGCAG
ATTCGTGCGC TCAAAGAACT TAAGCAGCTT GGTGAGATTT ACGGCTTTGA TTTGGGCCGT
CCTGCTGAGA ACTTCAAAGA GGCTGTTCAG TGGCTCTACC TGGGTTATCT TGCCGCTGTA
AAAGAGCAGA ATGGCGCTGC AATGTCCATT GGTCGCAACA CCACCTTCTT GGACATCTAT
GCAGAGCGCG ATCTTGCTCG TGGTACCTTC ACTGAATCTG AGATTCAGGA GATTGTTGAT
CACCTGGTTA TGAAGCTTCG CATGGTCAAG TTTGCCCGTA CCCCTGAGTA CAACGAGCTC
TTCTCCGGAG ACCCTCAGTG GGTCACTGAG TCCATTGGTG GCATTGGCAT TGATGGCCGC
TCTATGGTTA CCAAGTCCAG CTTCCGCTGG CTCCACACTC TTGAAAACAT GGGTACCAGC
CCAGAGCCTA ATCTGACTGT TCTGTGGTCC ACCAAGCTTC CAGTTGGCTT CAAACGCTAC
TGCGCAAAGA TTTCTATTAC CACCAGCTCC ATCCAGTATG AGAACGATGA TCTTATGCGC
GTTTATCATG GCGATGACTA CGCAATTGCT TGCTGCGTCA GCTCCATGCG CATTGGTAAA
GAGATGCAGT TCTTTGGCGC TCGTGCAAAC CTTGCTAAAT GTCTTCTTTA CGCAATCAAT
GGTGGTCGTG ACGAGAAGAC CGGCGAGCAG ATTGGTCCTA AGTATCGTGC AGTTGAAGGC
GAGTATCTTG ATTACGACGA TGTCTTCTCT AAGTATATGG ACATGATGCG CTGGCTTGCA
GGCGTTTACG TCAACGCTCT TAATGCAATC CACTACATGC ACGATAAGTA CAGCTACGAG
CGCATTCAAA TGGCTCTACA CGATGAGCAC GTTCATCGCT GGTTTGCAAC AGGCATTGCA
GGACTTTCTG TTGTTGCTGA CTCCCTCTCT GCAATCAAGT ACGCAAAGGT AAGGGTTGTC
CGCGATGAGA CTGGTCTTGT CACCGATTAC ATTATTGAGG GAAACTTCCC TAAATACGGT
AACGATGATG ACCGCGTTGA CACTATTGCT CATGACATCG TTGAGATCTT CATGAAGATG
ATTCGTCAGA ACCACACCTA CCGCGATTCC GTTCCAACCA CTTCTATCCT GACCATTACC
TCTAACGTTG TGTATGGTAA AGCTACCGGC AACACCCCTG ATGGTCGTCG CGCTGGTGTT
CCTTTTGCTC CTGGTGCTAA CCCAATGCAC CGACGTGACA CTTATGGCGC GGTTGCATCT
CTAGCCTCCG TTGCTAAGCT TCCATTCAAC GACGCACAGG ACGGTATATC CAATACCTTC
TCAATCATTC CTAATGCTCT TGGTAAGGGC TCTGATGTCT ACTTCCACGG CAGTGAGCTT
AACCTTGACC ACATCGACTT CTCTGACATG AATCTTGACA TTCAGATTGA GAACAAGATT
GATTGCGCCT GTGAGGCAGA TCCATCCGCA GCTGAAGGTG CTGAGGATCG TAAATAA
|
|---|
| Protein sequence | MQETPAQEAW DGFVGGNWQK AIDVRDFIQR NYTPYDGDDS FLAGPTEATT KLWADVMDLF
AQETANGGVL DMDTKLVSTI TSHEAGYIEK PLEQIVGLQT DKPLKRALMV DGGIRMAMAA
CKAYGYEVDP EIVNFYTYRR KTHNAGVFDV YTEEMRKCRH SHIITGLPDA YGRGRIIGDY
RRVALYGVDA LIADKTNQKN GTGSIMDEKT IRHREELSEQ IRALKELKQL GEIYGFDLGR
PAENFKEAVQ WLYLGYLAAV KEQNGAAMSI GRNTTFLDIY AERDLARGTF TESEIQEIVD
HLVMKLRMVK FARTPEYNEL FSGDPQWVTE SIGGIGIDGR SMVTKSSFRW LHTLENMGTS
PEPNLTVLWS TKLPVGFKRY CAKISITTSS IQYENDDLMR VYHGDDYAIA CCVSSMRIGK
EMQFFGARAN LAKCLLYAIN GGRDEKTGEQ IGPKYRAVEG EYLDYDDVFS KYMDMMRWLA
GVYVNALNAI HYMHDKYSYE RIQMALHDEH VHRWFATGIA GLSVVADSLS AIKYAKVRVV
RDETGLVTDY IIEGNFPKYG NDDDRVDTIA HDIVEIFMKM IRQNHTYRDS VPTTSILTIT
SNVVYGKATG NTPDGRRAGV PFAPGANPMH RRDTYGAVAS LASVAKLPFN DAQDGISNTF
SIIPNALGKG SDVYFHGSEL NLDHIDFSDM NLDIQIENKI DCACEADPSA AEGAEDRK
|
|---|
| |