| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0652 |
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| Symbol | |
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| ID | 8413512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 728234 |
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| End bp | 729559 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645022229 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_003179672 |
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| Protein GI | 257784455 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000483498 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGAAC TCACCTTACA TGTAGAACGC ATGAGCTATG GTCCAGACGC CATCGCTCAT
ACATCAGAAG GCAAAACGGT CTTCATCTCT GGCGGCGCCG TCCCTGGAGA TACTGTCAGC
GTACAGGTTA CCGAGAACTC AGATAGGTTT TCTCGCGGTC AGCTTGTAAA GGTTTTGGAG
GCATCGGAAT TCAGAGAGCC TCGTCCCAAT CCTTTTGTGG CACTTACGGG CGCCACTCCT
TGGGGCAACA TTGTCTACGA GCAGCAACTT GTCGAGAAAC GCAACAGTGT AGTCTCTGCT
CTTGAACGCA TTGGGCATTT TTCACCCGAC GATGTTTCGG AACTGGTAAA AGATATTGTT
TCCCCTGGCG AGCCGTGGGG ATACCGCAAC AAAATTGAAC TTGCGTTTAA GCGTAATGGC
AATAAAACAC TGGTAGGAAT GTATGCGCCT AACGGACAAG ATATTGTTCG CATTAAAGAC
TGTCCGCTGT TGGATAAAAG CAACCAAAAG GCAGTCGGCG CTGTAAGCGG TGCGCTCTCC
TACCTCTCAG GCTCTCACGA GCTTGATGTA GAGCGTATTG GCATCAGAGT ATCTAGACGC
ACTAAAGAGC TTGAAGTGGC GCTCTGGACC GCTCCGAGCG GCTTCCCACG CGCGCAAGTG
GCACGCGTTT TGAGTGACGC GGTAAAAGCA ACAAGTGTTG TCCGCGTGAT GACCAAAGGT
CCCAGTAAAG CTCGCCGTGT TGTAGGTGTA GAGCGCCTGA GTGGCTCCGG CTCGTGGAGC
GAGCTGATTG ATGGTCAGAA GATGCAGCTT TCTGCTCCTT CTTTTTTTCA GGTCAATACC
AAGGGCGCCG AGAAACTCGT TGAGCTTGTA CTTTCTGGTT TGGATGTTCA ACCAGATGAC
GAGGCAATGG ATCTTTATTG TGGAGCAGGA ACCTTTACGC TTCCTCTGGC AAAGCGTGCA
GGATTTGTTT CTGCTGTTGA AGCTTACGGC CCAGCAGTTA GAGATCTACG CCGCAACCTT
GAACTGGCCA AGCTTGATAA CGTTGACGCA GTAGGCGGAG ACGCAGGAAG AGAATTCCCC
GATACAGATG CTGACGTTAT TATTGTTGAC CCTCCTCGTG CGGGACTTGC TCCTGATGTA
ATTCAGCAGC TTTCTAAGCA GCCTGCACGT GCTATTGCAT ACGTTTCTTG TGATCCTGCA
ACACTAGCGC GTGATCTTAA GCGCTTTGTT GAAATTGGCT CATACAAACC TGTGAGCGTC
ACCCCAGTAG ACCTATTCCC ACAGACCTTC CATGTAGAAA ACGTTTGCCT GCTTAAACGA
ATTTAA
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| Protein sequence | MSELTLHVER MSYGPDAIAH TSEGKTVFIS GGAVPGDTVS VQVTENSDRF SRGQLVKVLE
ASEFREPRPN PFVALTGATP WGNIVYEQQL VEKRNSVVSA LERIGHFSPD DVSELVKDIV
SPGEPWGYRN KIELAFKRNG NKTLVGMYAP NGQDIVRIKD CPLLDKSNQK AVGAVSGALS
YLSGSHELDV ERIGIRVSRR TKELEVALWT APSGFPRAQV ARVLSDAVKA TSVVRVMTKG
PSKARRVVGV ERLSGSGSWS ELIDGQKMQL SAPSFFQVNT KGAEKLVELV LSGLDVQPDD
EAMDLYCGAG TFTLPLAKRA GFVSAVEAYG PAVRDLRRNL ELAKLDNVDA VGGDAGREFP
DTDADVIIVD PPRAGLAPDV IQQLSKQPAR AIAYVSCDPA TLARDLKRFV EIGSYKPVSV
TPVDLFPQTF HVENVCLLKR I
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