| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0639 |
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| Symbol | |
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| ID | 8413499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 716862 |
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| End bp | 718001 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022217 |
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| Product | ribonuclease D |
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| Protein accession | YP_003179660 |
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| Protein GI | 257784443 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.706315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGCAT TGTATATAGC AACCTCAGAA GAACTTTTCG CATTTTGTGA GCGAGCAAAG
ACTTCACATA TCCTTGCAGT TGATACGGAG TTTCTTCGCG AGAAAACCTA CTTCCCCAAG
CTTTGCCTGG TACAGGTTTC CACGGGTTCT GAGATTGCCG CGATTGATCC GCTGCTGATT
GATGACCTCA CTCCACTTAA AGAACTCTTG GAGAATCCAG AAATTGTCAA GATTTTACAT
GCCTGCTCAC AAGACCTTGA GGTCTTGCTA GAAAAAATGG ATTGCGCATG TGCTCCTGTA
TTTGACACGC AGGTTGCAGC TGCATTTTTG GGTATGCGAC AGCAGGTGAG CTATGCCGGG
TTGGTAGAAA ATTTTGCCAA CGTTAAACTT GCTAAGGCTG AGTCATTAAC GGACTGGTCA
AAGCGACCTC TTGATAAAGA ACAGTTGGTA TATGCTGAGG ATGATGTTAG ATATCTTCCC
GCAATTTACA ATCAAATGGT CGAGAAGCTC ATCAAACTTG ACCGTTTAAG TTGGCTTAAG
CCGGAAATGG ACCAGCATAC AAATATTGAT CAGTACCGTC GAGATCCCTA TCAGGCATAT
CTTCGTTTGA AGCGTTCTGG TTCACTTACG CGCAGGCAGC TTGCTATTGC TCGAGAGGTT
TGCGCCTGGC GAGAAGAGAT TGCTGCTAAA AGAGATGTTC CACGTAAATG GGTGCTTTCT
GATGAACTTA TTATCGAGAT TTGTCGCCGT GTCCCTACAA CATCAGATAG ACTACGCAAG
ATTCGTGGCA CTGAGCAGAT TTCTCAAGGT GGGGTAGTAC ATCTTCTGGA TGCAATTAAA
CGCGGACAAA AGACACCTGC TGGTCAGTGC CCAAAAATTG AGCATCATGC TCATCCTTCT
GCTGGCTCAG AAGGTGTCGT TGAGTTAATG TATGCCCTTA TTAGAATTGT TTCAGAAAAA
GAGGGAATTG CATCTCCTTT AATTGCTAAT AAAGACGATC TTACTGATCT GCTTTTGGAC
AAGGATGATG CAAGACTTAA AACTGGATGG CGCTACCAAT TAGTAGGTAA ACAACTTGTT
GGACTACTCA ATGGCGAGGT AGGGCTTACG GTTAAAAATG GTCGAGTAGA GCTGCTGTAG
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| Protein sequence | MDALYIATSE ELFAFCERAK TSHILAVDTE FLREKTYFPK LCLVQVSTGS EIAAIDPLLI
DDLTPLKELL ENPEIVKILH ACSQDLEVLL EKMDCACAPV FDTQVAAAFL GMRQQVSYAG
LVENFANVKL AKAESLTDWS KRPLDKEQLV YAEDDVRYLP AIYNQMVEKL IKLDRLSWLK
PEMDQHTNID QYRRDPYQAY LRLKRSGSLT RRQLAIAREV CAWREEIAAK RDVPRKWVLS
DELIIEICRR VPTTSDRLRK IRGTEQISQG GVVHLLDAIK RGQKTPAGQC PKIEHHAHPS
AGSEGVVELM YALIRIVSEK EGIASPLIAN KDDLTDLLLD KDDARLKTGW RYQLVGKQLV
GLLNGEVGLT VKNGRVELL
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