| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0613 |
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| Symbol | |
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| ID | 8413472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 685719 |
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| End bp | 688940 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645022190 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_003179634 |
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| Protein GI | 257784417 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.438109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.344128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAGC GTACTGATAT CAAAAAGATT TTGGTTATCG GTTCTGGTCC AATTGTTATT
GGTCAGGCTT GTGAGTTTGA CTATTCCGGC ACACAGGCTT GCCGCGCCCT TCGCAAAGAG
GGTTTTGAGG TTGTTTTGGT CAACTCAAAT CCAGCAACCA TCATGACTGA CCCAGAAACT
GCAGATAGAA CGTACGTTGA GCCAATCACT GTTGAGTCCG TTACTCGTGT CATCGAGCGC
GAGCGTCCCG ATGCACTTTT GCCAAATATG GGCGGTCAGA CTGCTTTGAA CTGCACCATT
GGTCTTGGCG AGGCAGGTGT TCTTGACAAG TACAATATCG AGGTTATCGG CTGCAACCTG
GATTCTATCC GTACCGGTGA AGACCGCGAG CTCTTTAGCG AGGCGGTCCA GGACATTGGC
CTGGAGGTTG CTCGCGCAGA CATTGCTCAT TCTATGGAAG ACGCTCAGCG CATTGTTGCC
GATTTGGGAT ATCCTGTGGT CATTCGTCCA AGCTTTACTC TTGGTGGCGC TGGCGGCGGT
ATCGCGCACA CTCCAGAAGA GCTCGTAGAG ATTGTGGAGC AAGGCCTCTT GCTTTCTCCT
GAGCACGAGG TGCTGGTAGA GGAGTCCATC GAGGGCTGGA AAGAGATTGA GATGGAGGTT
ATGCGCGATA CCACAGGTAA CGGTATTGTT GTTTGCTCCA TCGAAAATCT TGATCCTATG
GGTGTCCACA CCGGAGACTC TATCACCGTT GCTCCAGCTC AGACGCTTAC CGATAAGGAG
CTCCAGAACC TCCGTGATTA CTCCATTGCT ATTCTCGAGC GTGTAGGTGT TGCCTGCGGT
GGTTCCAACG TTCAGTTTGC GGTCAATCCA ACTAATGGCC GCGTCATCGT TATTGAGATG
AATCCTCGCG TTAGCCGTTC TTCCGCGCTT GCTTCCAAGG CAACCGGTTT CCCAATTGCA
AAGATGGCTG CGCTGCTCTC TGTTGGTTAT ACGCTTGATG AGATTACCAA CGACATCACC
AAGGCAACTC CAGCAGCTTT TGAGCCTTCT ATAGACTACT GCGTGGTTAA GGTCCCTCGC
TTTGCCTTCG TCAAGTTCAA GGGCACCAGC CGCGTTCTGA CAACCCGTAT GAAGTCGGTT
GGCGAGGTCA TGGCTATGGG CAGAACCTTT GAGGAGGCCC TGCAGAAGGC GCTTCGTTCT
TTGGAGCAAG ATCGCGCCGG TCTGGGTGCT GATGGTCACG ATGCCTTTGA CGAGAAGAAC
TTTGATGAGC TGGTCAGCAG ACCAACACCA GAGCGTATTT TCTATGTTGC TGAAGCTCTG
CGTAGAAACT GGAGCGTTGA GCGCATCCAC GATATGACCG GTATTGATCC TTGGTACCTG
CATCGTATGG CTGGCATCAT TAACGCCGAG AAACACATCA AGAAACTGGG GCTTTCTGGT
CTGACTACCC AAAATATGCT TGCTGCAAAA CAGCTGGGCT TTTCGGATGA GCAGCTTGCG
TACCTTACTG GTACCAAGGC AGACGTTGTC CGTGCCGTTA GGGAAGTGCT GGGTGTGCGC
CCACAGATTA AGACTGTAGA TACCTGCGCA GGTGAGTTTG GTGCAACTAC GCAGTACCAC
TATGTCACTT ACGAGAAGGG CAACGCTACA GAGTACGTTA AGGCTGAAAA GCCACGCGTC
ATGATCCTCT CCGCAGGTCC TAATCGCATT GGTCAAGGTA TTGAGTTTGA CTACTGCTGC
GTACATGCTT CGTATGCTCT TCGTGAGCAG GGCTATGAGA CTGTCATGGT CAATTGCAAT
CCAGAAACCG TATCCACAGA CTACGACACC TCTGACCGTC TGTATTTCCA GCCTTTGACT
TTTGAAGATG TCATGGACGT CATTGAGGTT GAGAAGCCAG AAGGCGTTAT TGTCACCCTT
GGTGGACAGA CCCCAATTAA GCTTGCGCGC GCTCTGAAGG ATGCCGGCGT TCCTATCATG
GGTACCCAGC CAGAGGCTAT TGACCTGGCA GAGGACCGAG ACCGCTTCGC AGCCCTTCTA
GACCGCCTCA ACATTGCCTG CCCGCCATCG GCAGTTGCAT CAACTATGGA CGAGGCAAGA
GATGCCGCTC GCCGCATTGG TTACCCATTG ATAGTCCGCC CAAGCTATGT TCTTGGTGGT
CGTGGTATGG CTATTGTCTA CGATGACTCT GACTTGGTTA CTTACATGAA GTCCGCTACA
CACGTCACAC CAGATCGTCC GGTCTACTTG GATGCCTTCC TTGAGGACGC TATTGAGCTG
GACGTTGATG CTCTTTGCGA CACCGAAGAG TGCTACGTAG GTTCTGTCCT GGAGCACATT
GAGGAGTGTG GCATTCACTC TGGCGACTCT GCTTGCTGCT GGCCGCCCTT CTCGCTCTCT
GAAAAGATTG TTGGCCAGAT TAGAGCTATC ACCAAAAAAT TGGCGCTTGC CTGCGACATC
CGAGGTTTGC TGAATATCCA GTACGCTGTT CGTGACGAAC ATGTCTTTGT CATCGAGCTC
AATCCTCGAG CTTCTAGAAC TGTGCCTTTC TCGTCTAAGG CAACTGGCGT CTCCCTGGCT
AAGTTTGCAT CTCGTATCAT GGCTGGCGAG AAAATCAGTG AGCTTAAAGC ACAAGGTCTG
CTCCCTGATG AGAATCGTAG CGTTGACTAC TATGCGGTTA AAGAGGCGGT TATGCCTTGG
TCCAGGTTTC CTGGCGCCGA CTCAATCCTT GGTCCTGAGA TGAAGTCTAC TGGTGAGGTC
ATGGGCATTG CTCGTACCTT CCCAGCAGCG TATGCAAAGA CTCGTGAGGC AGTTGAAAAT
AAGCTTCCTG AGCAGGGCTC AGTCTTTATC AGTGTGTGCG ACCGCGATAA GCGTGCCATT
GCTCCTGTTG CTATGGCTCT AGAGAACCTT GGTTACGGCA TCTACACTAC GGGTGGTACA
GCAAAAACGC TGCGTGCGGC TGGTATCAAC TGTACTACTG TCAATCGTAT TTCCGATGGT
CATCCAAACG TCGTTGACCT TATGCGCGAT AAGACCGTCA GCTTTATTAT CAATACGCCT
CACGGTCACG AGGCCCACAG TGATGGCACC AAGATGCGTG CAGAGGCTGT CAGCCAGGGT
ATTACCTGCG TTACTGCAAT GTCTGCAGCA ACTGCTCTTA TCCAAGCACT CGCGGCAGCA
AGAAAGAGTA AGCCAGAGAC CTTTGCTCTG CAAGATCTTT AA
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| Protein sequence | MPKRTDIKKI LVIGSGPIVI GQACEFDYSG TQACRALRKE GFEVVLVNSN PATIMTDPET
ADRTYVEPIT VESVTRVIER ERPDALLPNM GGQTALNCTI GLGEAGVLDK YNIEVIGCNL
DSIRTGEDRE LFSEAVQDIG LEVARADIAH SMEDAQRIVA DLGYPVVIRP SFTLGGAGGG
IAHTPEELVE IVEQGLLLSP EHEVLVEESI EGWKEIEMEV MRDTTGNGIV VCSIENLDPM
GVHTGDSITV APAQTLTDKE LQNLRDYSIA ILERVGVACG GSNVQFAVNP TNGRVIVIEM
NPRVSRSSAL ASKATGFPIA KMAALLSVGY TLDEITNDIT KATPAAFEPS IDYCVVKVPR
FAFVKFKGTS RVLTTRMKSV GEVMAMGRTF EEALQKALRS LEQDRAGLGA DGHDAFDEKN
FDELVSRPTP ERIFYVAEAL RRNWSVERIH DMTGIDPWYL HRMAGIINAE KHIKKLGLSG
LTTQNMLAAK QLGFSDEQLA YLTGTKADVV RAVREVLGVR PQIKTVDTCA GEFGATTQYH
YVTYEKGNAT EYVKAEKPRV MILSAGPNRI GQGIEFDYCC VHASYALREQ GYETVMVNCN
PETVSTDYDT SDRLYFQPLT FEDVMDVIEV EKPEGVIVTL GGQTPIKLAR ALKDAGVPIM
GTQPEAIDLA EDRDRFAALL DRLNIACPPS AVASTMDEAR DAARRIGYPL IVRPSYVLGG
RGMAIVYDDS DLVTYMKSAT HVTPDRPVYL DAFLEDAIEL DVDALCDTEE CYVGSVLEHI
EECGIHSGDS ACCWPPFSLS EKIVGQIRAI TKKLALACDI RGLLNIQYAV RDEHVFVIEL
NPRASRTVPF SSKATGVSLA KFASRIMAGE KISELKAQGL LPDENRSVDY YAVKEAVMPW
SRFPGADSIL GPEMKSTGEV MGIARTFPAA YAKTREAVEN KLPEQGSVFI SVCDRDKRAI
APVAMALENL GYGIYTTGGT AKTLRAAGIN CTTVNRISDG HPNVVDLMRD KTVSFIINTP
HGHEAHSDGT KMRAEAVSQG ITCVTAMSAA TALIQALAAA RKSKPETFAL QDL
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