| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0604 |
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| Symbol | |
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| ID | 8413461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 673442 |
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| End bp | 674752 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022179 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_003179625 |
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| Protein GI | 257784408 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.293813 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCGGTA TCAATCGTAG GCAGTTTGTC ACCTTAAGTG CATCAGCTCT TTGCTCACTG
GGTCTTGTTG CTTGTGGAGG AAATAACAAC CAAAAGCAGG GAGGATCTGA TTCAGCAAAA
GGTTCAGTTT ATTTTCTAAA CTTCAAGCCT GAGGCTGATC AGCAGTGGAA AGATCTTGCA
GCTAAGTATA CTGAGGAAAC TAAGGTTCCA GTAAAGGTAG TAACTGCTGC TTCTGATACC
TATGCACAGA CATTCCAGTC TGAGATTAAC AAGGACGCTT CTGTAGCACC AACACTGTTC
CAGACAAATG GACCTTCCGG TCTTATTGGT GTAAAGGATT ACTGTATTGA TCTTAAGGGC
GCCAAGATTC TAGATGAGCT CACAAATGAT GCTCTTAAGC TTCAGGAGGA TGGCGTTGTC
TATGGCGTTG ACTATGTAGA GGAAGACTAC GGCATTATCT ACAACAAGAA GTTGCTTGAG
AAGGCAGGCT ATAAGGGAGA TGACATCAAG GACTTTGCTT CTCTGAAGAA GGTTGTTGAG
GATATTCAGT CTCGCAAAGC AGAACTTGGT GTAAAGGGAG CATTTACCAG TGCTGGTCTT
GATTCAAGTT CCGACTGGCG CTTTACCACT CACTTGGCTA ACCTCCCTCT TTACTATGAG
TTCAAAGACA CTGGAAAGCC AGATGCTAAA GAGATTAAAG GAACCTATTT GCCTAACTAC
AAGCAAATTT TTGATCTCTA TATTAACAAT GCTACTTGTA GTCCTACTGA GCTTGCTGGT
AAAACGGGCG ATGACGCTGT TGCAGAGTTT GTTAACGGCG AGGCTGTCTT CTATCAGAAT
GGTACTTGGG CATACAATGA CATCAAGGGA CTTGGTGACG ATGCTCTTGG CATGATTCCA
ATTTATATTG GTGTTAAGGG TGAAGAGAAG CAGGGTATGT GCTCTGGCGG TGAGAATTAT
TGGTGCGTTA GCTCAAAGGC GGACGACGCT TCCCAGAAGG CAACACTTGA TTTTATGTAC
TGGTGTGTAA CTTCTGATAC TGCTACTACA GCAATTGCAG AAGATATGGG CCTTACTATT
CCATTCAAGA ATGCAAAAGC AACTAAGAAT GCTCTTGCAA ACATTGCAGC TGAGTACGCA
AAGAAGGGCA ATGAGTCCGT AGCTTGGGAC TTCATTTACA TTCCTTCACA GGAGTGGAAG
AACAACGTTT CCAGCGCACT TAAGGGTTAT GCAGCAGGAA CAGAGGACTG GGATGCCGTA
AAGTCTGCAT TCGTTGATGG TTGGAAGACT GAAAAAGAGG CCAACGCATA G
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| Protein sequence | MSGINRRQFV TLSASALCSL GLVACGGNNN QKQGGSDSAK GSVYFLNFKP EADQQWKDLA
AKYTEETKVP VKVVTAASDT YAQTFQSEIN KDASVAPTLF QTNGPSGLIG VKDYCIDLKG
AKILDELTND ALKLQEDGVV YGVDYVEEDY GIIYNKKLLE KAGYKGDDIK DFASLKKVVE
DIQSRKAELG VKGAFTSAGL DSSSDWRFTT HLANLPLYYE FKDTGKPDAK EIKGTYLPNY
KQIFDLYINN ATCSPTELAG KTGDDAVAEF VNGEAVFYQN GTWAYNDIKG LGDDALGMIP
IYIGVKGEEK QGMCSGGENY WCVSSKADDA SQKATLDFMY WCVTSDTATT AIAEDMGLTI
PFKNAKATKN ALANIAAEYA KKGNESVAWD FIYIPSQEWK NNVSSALKGY AAGTEDWDAV
KSAFVDGWKT EKEANA
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