| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0549 |
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| Symbol | |
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| ID | 8413403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 634907 |
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| End bp | 635935 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 645022122 |
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| Product | DNA polymerase III, epsilon subunit |
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| Protein accession | YP_003179571 |
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| Protein GI | 257784354 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.860226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000115657 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTTCT GGTATCTAGT GTTTCTCGTA GTTGTGTTCC TACTTTTCAA AAAGCGGCGC
AATAAAAAAC AAAATTCGAC AAATGGTTTT TACCCAACAC CTCCTGCTGG TGCACAAAAT
ATCCCATTGC CTGTATCCCC TCAAGCACCA AAAGTTAAAA CTAAACCAAG TAATGTTCCT
TTAAAAAGAA CGCGCTGGGC AGATTTTGAT GTCTCAAAAT ATCCTGAATC ATATGTAGTA
GTAGATCTTG AAACAACAGG GCTAGACGTC CATTACTGCG AAATCATTGA AATTGCCGCT
CTTAAAGTAG TAGACGGAAA AATTACAGAA GAATTTAGTT CGCTCATTCA TCCTCCAAGA
GAGATACCAT CTGGCGCAAC TGCAATCAAC CATATAACTA ATCACATGGT AAAGAATGCG
CCAACGCTCG ATAAAGTTAT CCCGCAATTT GATACGTTCG TTAAAGGATT TCCTCTAATC
GGTCATAACT CTCTTAGATA TGACGCGATT GTTCTCGAGG AGAATTTCTT TAGACGCGAC
TTTTTATGCG ATTATGTTTG GTATGACACA TACAAATTGG CTAGACAAAT CTTAGAGCCA
CCATACAAAC TGATAAATAT TGCCAAAAGA CTTAACGTTA AACAACATGG CAAAGCTCAC
AGGGCTCTCG CGGACTGTTA TATGACTTAT GGCATCTACG AAAAGATGAG AGAAATTTCT
ATAGCAACAA CGGAAAACGT AAAATGTATT GAGAAATACA CCGATAAAAA CACTGAAAGC
ACAAAGCTTT CTGGAACCGT CTTTTGCTTG ACAGGTGTTC CGTGCTGTAT GCCTAAAAGC
GATTTTCTAA AAATGCTAAT TACAAATGGG GCAACCTTGA GCGAAAGAGT AACTCTCAAA
ACTAATTATT TGATTGATTG CTCTGGAGAC GAAACCACAA AAATTAAAAC AGCTAGGAAG
TATGCCGACC GAACTGGCAT CAAAATTATA AGTGAGCAAC AAATGCTCGA AATGTTAAAA
CAAAGCTAA
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| Protein sequence | MAFWYLVFLV VVFLLFKKRR NKKQNSTNGF YPTPPAGAQN IPLPVSPQAP KVKTKPSNVP
LKRTRWADFD VSKYPESYVV VDLETTGLDV HYCEIIEIAA LKVVDGKITE EFSSLIHPPR
EIPSGATAIN HITNHMVKNA PTLDKVIPQF DTFVKGFPLI GHNSLRYDAI VLEENFFRRD
FLCDYVWYDT YKLARQILEP PYKLINIAKR LNVKQHGKAH RALADCYMTY GIYEKMREIS
IATTENVKCI EKYTDKNTES TKLSGTVFCL TGVPCCMPKS DFLKMLITNG ATLSERVTLK
TNYLIDCSGD ETTKIKTARK YADRTGIKII SEQQMLEMLK QS
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