| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0532 |
|---|
| Symbol | |
|---|
| ID | 8413386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 617114 |
|---|
| End bp | 618496 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 645022105 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003179554 |
|---|
| Protein GI | 257784337 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000254138 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAG GTAGGAATCC GGCAGTAGTC GCCGGCCTGC TCAGTGGACT GGTTCTTGTA
GCAGAGCCAG CGTCTGCGCA TGCCCTTACA ACTAATGTAA TTCGCCAAAC TCCACTTGGA
GCAATTTTCA CAGGCATCGG TATCGTACTT GCTGCGGTTG CTGTCATTTC TGGTACTGCA
TTCGTTGTTT CTCGTGTTGT AAATCGTGGC GAGAAAACCG ATGGGACAGG AGAAGAGGTT
CAGTCAGGTA CGTCTTTCCA GAGTACAGAC GAGGTTACAT CTTCAAAGCA GATTCCAGCA
GCATCAGACT TCTCGCCAGA GCAGAGCGTT GTGATTCCGC TGGATTCTTC AAGGCGCTCA
ATTGCTGCAT ATAAGCCAAA GCACATGAGA GTTTCTCAGT GGGATATGAC TGGCTCTATC
CGTGTTCAGT CTGCTAAGCC AGTTGTAAGA AAACCGCAGG TTGTAAGCGC AGATGCAGAA
GGCGTTCTTC CAGTTCGCGC TAAGAAAGCA CCTGCACACT CTACAAACGA CTACGCGCAG
ATTGCAGAGA ACTATACCAA GCTTATAAGT TGGCGTGAGC GCACTGTTGC TCGTGCAAAG
GGCGCTGCTG CTGTACTTCT TGAGCGCCTA GGACAAGACC CTATGGATGG TCTGCCTATT
ATCGAGCGCG CTGATGGAAC TGTTGGTGAT GTTGGCACTG CTTGGTGGAC TAAGGCCGTG
GGCGAAGAGT CTATTACGCG CGATTTTGGC ATTGCTGAGA TTGGTGCTGA GGCTATTCCT
GAAGACTTTA CCAATCATGC TGCGGATATT TCTAGTCGTA TCTCTTACGT TGATCAGGGA
GTTTTCCCAG AGAAGCGCAC GATTGATGAG CTTGAACACA CTGATGATTG GGCGCTTGCG
CTGGCTGCTA TGGATGAACA TTTAGCTCGC CATGATAATT TGCAGATGCG CAAGTATCAT
CCAGTGCAGT TGCCAATTAT TGGTCAGGCT GCTGCTGAGG CGGAAGTTAC AAGTCCAGCG
GAGTCGTCGG GTGCAAAACT CGCCGCATCT CACAAAGTTT CTACAGCTCA AGTACGTTCT
TCTCGCGAGC CGAACTACGC TGGTGTTGTT GCGCAATCAA CCGCAATGCC GCTGGTAAAG
GCGACAAACG ATACATCTTC GCATGTTCAG GACATCTTTG ACGCGGTTGA GCGCGAAATG
GCAGCTGAGC TTCAGGCGGC TGACGAAAGG CCAACGCGTG AGTTGCTACG CCTTATTGAG
GGTGGCACCA GCAAGATGAA GAAGATCTCT TCACTTGATC TGGGCGAGAA GACCGCTTCA
GATAAGGCTT CTTATAAGCC TCGTCACTTT GCAGGTGAGC TTCCTCTGGT ACGCGAGGCG
TAA
|
|---|
| Protein sequence | MTEGRNPAVV AGLLSGLVLV AEPASAHALT TNVIRQTPLG AIFTGIGIVL AAVAVISGTA
FVVSRVVNRG EKTDGTGEEV QSGTSFQSTD EVTSSKQIPA ASDFSPEQSV VIPLDSSRRS
IAAYKPKHMR VSQWDMTGSI RVQSAKPVVR KPQVVSADAE GVLPVRAKKA PAHSTNDYAQ
IAENYTKLIS WRERTVARAK GAAAVLLERL GQDPMDGLPI IERADGTVGD VGTAWWTKAV
GEESITRDFG IAEIGAEAIP EDFTNHAADI SSRISYVDQG VFPEKRTIDE LEHTDDWALA
LAAMDEHLAR HDNLQMRKYH PVQLPIIGQA AAEAEVTSPA ESSGAKLAAS HKVSTAQVRS
SREPNYAGVV AQSTAMPLVK ATNDTSSHVQ DIFDAVEREM AAELQAADER PTRELLRLIE
GGTSKMKKIS SLDLGEKTAS DKASYKPRHF AGELPLVREA
|
|---|
| |