Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0531 |
Symbol | |
ID | 8413385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 614647 |
End bp | 616752 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 645022104 |
Product | transcription termination factor Rho |
Protein accession | YP_003179553 |
Protein GI | 257784336 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000460455 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGTCGGACG AAACATCTTC GGTCCAAAAT GATTCTTTAA ACGATGTAGA AATTACTCCA GCACCACGTA GACGTGGTAG ACCTCGCAAG AGTAAAAATA TTAATTCGGA AAATACTACT TCTGAAAATA ACAATTCTGA TACAACTGAA GAAAAGACAT CTAATTCGTC AGCTGTGAAG CGTCGTCGTG GTCGTCCTAC TAAAAAGGAG ACTGAAGCTC GTCGTGCAGT AGAGGCAGTT ATGGTTGAAG CTTTAAATGC AGCTGGCGTT GCAGAGCCTC CTAAGCGTCG TCGCGGTCGT CCAAGCAAAG AAGAGATGGA GGAGCGCGCT TTACGGGAGC AGACTCTTGA GGCTCTTCAA GCGGAAGTTT TGGCTCAGGT CCAGGCAGGC GGCAAGGTCT CTTCTGACGT TGTAGATACT GATCGACTTA CCAAGATTGT TCAGGATGCA ACTCAGCCTT CTGTAGAGGT AACCCCTGTT CCAGCTTTTA CCAAAGCAGA GGCAGAAAGT ACAGCGGACC AGAATGACAA TGCATTCCAG AAGAGCATTG TTGAACATCA AGACAGTGCT GAGCAGCAGG AAAGTCCAGT TCAAGAGCAG ACTTCTGGCG CAGAGGCAGA TGCTGAGGTA GCTCCAACAG GGCGTCTAGG ACGTTCACGT ACGGGAGTGG CACGTCGCCG GCACCGTAAT GCTGAGCCAA AAGAAGCAGC TCAGGAGGGC GAGAAGACAC AGGAAAACGC ACACGCTAGC AATCAAGAGC ATTCTTCTCG CGATCGTAGG CAGAACAACC AACGCAACAA GAATCGTAAG CAAGGTCAGG CAAGCAAACC TTCACTTTCC AAAGAAATGC TTCAAGAGAT GAAGCTTTCG GAGCTTCGTG CTAAAGCAAC TGAGTTGGGT ATTGAGTATG CGGGCGTTCA CAAGTCTGAT TTGATTGAGC TTGTGTATGC TGCATCTGCA GCCGCTGAAG GCTTCAAGAC TGTTGAGGGT ATTCTTCAGA TTAGCAATGA AGGCTACGGC TGGATTCGTA CAGGTAATTA TATGGAAGGC GATAACGACG CCTTTGTTCA CCAGCAGATT ATTAGAAATC TTGGTCTGCG TCCTGGCGAT AGCGTTTTGG GTATGGTTGG ACCTGCTCGC GTAAATAGTA AGTATCCACC ACTACTTCAA GTTACCCAGG TTAATGGTGG GGAAGTTGAG GGTCTTAAGG ATCGTCCTCG TTTTAAAGAC CTGACACCTA TTTTCCCAAA TCAACCTCTC ACTATGGAGC ACGGCAAAGA CTCCATTACG GGGCGTGCAA TTGATTTAGT AGCTCCTATC GGTAAGGGTC AGCGTGGTTT GATTGTCTCG CCTCCAAAGG CAGGTAAGAC CACTATTTTG AAGCGTATCT GCCAGTCCAT TACCATCAAC AATCCCGAAG TTCATCTCTT CTGCCTTTTG GTAGACGAGC GTCCTGAGGA AGTCACGGAC ATGGAGCGTT CCATTAAGGG TACTGTCGTT GCTTCAACTT TTGATATGCC AGCAGAGAAT CACACTGTTG TTTCTGAGCT TGTCATTGAG CGAGCAAAGC GTCTGGTTGA GATGGGTCAA GACGTTGTAG TTATTCTAGA CTCCATCACA CGTCTTGCTC GTGCGTATAA CCTTGCCATC CCTGCATCTG GTCGTATTCT GTCTGGCGGT GTTGACTCCG CTGCTCTGTA TCCACCAAAG AAGTTCTTAG GTGCAGCTCG AAATATCGAA AGCGGTGGCT CACTCACCAT CATTGCTTCT GCTCTCGTAG ATACGGGCTC CAAGATGGAC GAGGTTATCT TCGAGGAGTT TAAGGGCACC GGTAATATGG AGCTCAAGCT TGACCGTGAT CTGGCAGACC GCCGAATCTT TCCAGCTATT GATCCCGTTT CTTCTGGTAC CCGTAATGAG GATTTGCTTA TTAAGCCAGA GCTTCAGCCT ATGGTTTGGG GCGTTCGTCG TATTCTTGCA GGCTTTAACA ACACTGAGCG AGCTACTACT GCTCTTATCA GTGGTCTTAA GCAGACCGAC AATAACCAGG ACTTCTTGAT TAGATCTGCA AAGAAGGCCG CACAGTCTGA CTATCTACAG AACTAG
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Protein sequence | MSDETSSVQN DSLNDVEITP APRRRGRPRK SKNINSENTT SENNNSDTTE EKTSNSSAVK RRRGRPTKKE TEARRAVEAV MVEALNAAGV AEPPKRRRGR PSKEEMEERA LREQTLEALQ AEVLAQVQAG GKVSSDVVDT DRLTKIVQDA TQPSVEVTPV PAFTKAEAES TADQNDNAFQ KSIVEHQDSA EQQESPVQEQ TSGAEADAEV APTGRLGRSR TGVARRRHRN AEPKEAAQEG EKTQENAHAS NQEHSSRDRR QNNQRNKNRK QGQASKPSLS KEMLQEMKLS ELRAKATELG IEYAGVHKSD LIELVYAASA AAEGFKTVEG ILQISNEGYG WIRTGNYMEG DNDAFVHQQI IRNLGLRPGD SVLGMVGPAR VNSKYPPLLQ VTQVNGGEVE GLKDRPRFKD LTPIFPNQPL TMEHGKDSIT GRAIDLVAPI GKGQRGLIVS PPKAGKTTIL KRICQSITIN NPEVHLFCLL VDERPEEVTD MERSIKGTVV ASTFDMPAEN HTVVSELVIE RAKRLVEMGQ DVVVILDSIT RLARAYNLAI PASGRILSGG VDSAALYPPK KFLGAARNIE SGGSLTIIAS ALVDTGSKMD EVIFEEFKGT GNMELKLDRD LADRRIFPAI DPVSSGTRNE DLLIKPELQP MVWGVRRILA GFNNTERATT ALISGLKQTD NNQDFLIRSA KKAAQSDYLQ N
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