| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0519 |
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| Symbol | |
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| ID | 8413370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 598042 |
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| End bp | 601404 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022089 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_003179541 |
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| Protein GI | 257784324 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.388344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00158278 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGGCA TCGAGAAAAG CACTCGCTGG AGTGTTCTTA CGCAAGACGT ATATCTAGAG
TCATTGTTTG AAAAAGAATT GCACGTTACC CCACTTGTTG CTCGTGTGTT GGTAGCACGT
GGATTTACCG ATGTAGCTGA AGCTCAAGAG TTTCTCTCAC CATCCCTGCA AAGAGATTGG
CTTGATCCAC AGTGTATTCC AGGAATGGCT GAGGTTGCCA ATCGTGTTCA AAAGGCCATT
GTTGAACAGC AAAAGATTGC TGTTTTTGGT GACTTTGACG TTGATGGAAT GAGTTCAACT
TGTTTGCTCA CCTTGGCTTT GCGCCGATTG GGTGCTGATG TTTTGCCGTA TATTCCACAT
CGATTTGGTG AAGGATACGG ACTTTCTAAA GAGGCTTTAG CAAGAGTTTT ACTAGATAGA
AAGCCTGATT TAATTATTAC GGTAGACAAT GGTATTGCTG CTGCTCAAGA GGTTGCATGG
CTTTTGGAAC AGGGGATTGA TGTTGTTATT ACCGATCACC ATGAACCCGC AGATTTGGTG
CCCCAGGGTG TCCCTGTAAC TGATCCAAAA CTTATTGAGG ATTGTCCTTC CAGAGAGCTT
GCTGGTGCAG GCGTTGCCCT TAAGCTAGTA CAAGTTTTAG GGCAACTTCA AAATCAGCCT
CAGCTTTGGC TTGATTACAT TGATGTTGCC ATGTTGGGCA CGCTGTCTGA CATGATGATG
CTCAATAAAG AAAATCGTGC ACTGGTCTCT GAAGGTGTTA AACGTCTACA GAAAGGCCTT
CGTCCTGGTC TGGTGGCTCT TGCTGCTGTT GCCGGTCAAG ATATTGCACA AATTTCTGCA
GATAATCTGC CATTTTCTAT TATTCCACGT CTTAACGCGG CAGGTCGTAT GGGTACTACC
GATATTGCCC TTGACCTTCT TCTCACAGAA GATGCAGAGG AGGCAACTAT TCTGGCTGGC
AAGCTGGAAG AGATTAATGC TGAACGTCGT GCTATTGAGG CAAAACTCAC TGATGAAGCC
CTTGAGCAGG CAAAAGAAAT CTACGACGGT GGTCACGCTA TTGTGCTTGC CAAAGAGGGT
TGGCACGAGG GTGTAAAGGG TATTGTTGCT TCAAGAATTG TTAATCGCTA TCACGTACCT
TGCATTCTGT TTACCATCCA AGATGGCGTA GCTCGTGGTT CTGGACGCTC AGTTGGCTCC
GTTGATTTAT TCCATGCGGT AGAGCAGTGT GCAGATCTTA CTGTTCGTTT TGGTGGTCAC
CAGGGTGCTG TTGGCGTAAC GGTAGAAACA TCAAAGATTG ATGCATTTAG AAAGCGCTTA
TCTGAGGTTA TGGCAGAGCT TCCAGAAGAA GAGTTTGAGT CTTCAGGAGA AGTAACTGCC
TTGGTAAACC TTGACGAGAT TACTATTAAC TCTATTGATG CACTTGAGGC GCTGCAGCCT
TTTGGTCAGG GTAACAAAAA ACCGCTCTTT GGCGTTAAGG GCGTAGTGAT GAAGAATCGT
TCGCGCGTTG GCGCAGGCGG AGCTCATCTT TGTTTTATGG CTTCAAATGG CATCTCTTCA
ATTTCATCCA TTATGTTCAG AACACCTCAT GTAGAGGCGG CAGCTGAGTA TGACGGTGCT
GTTGATTTGA TTTTTGAGGC AGTTAACGAG ACTTGGCAAG GTAGAACCAA ACCAAAACTC
ATGGTTAGAG ACATTCTCTA CAGAGACTTT ACCGATGAAG ATGATGGTCC CATTGAAGCG
GACCTTCTCG GCAGTGCTGT TGACTTGCCA CTTGTGGTTA CCAAAGAGGC TACAGAGACT
GAAGAAGCGT CTCAAGAACA GTCGCAACAA AAACGCCATG AGCTGGAGAG CCTGCCTTAT
GAGGAGCTCA CTCAGACCCT GGTTACATCC ATGATTGGTT CAAGAGAACT CTTGCCTCTA
CAAAAGAAAA CATTAGAGGT TCTCTCTCAA GGAGAATCCT GTCTCTCTGT TATGGCAACA
GGTAGAGGTA AATCACTCAT TTTCCAAGTT TACGCTGCTT GTGTTGCACT TCTGCAACAC
AAGATGAGCG TATTTGTTTA CCCACTGCGT GCCCTCATCA ACGACCAGGT TCAAAGTATG
AAGAATACCT TTGAGCCTCT GGGAATTTCT GTTGAGGTGC TTAACGGAGA AACAGACCTT
ACCAGTCGAG AAGACCTGTT TGCTCGCATG GCAAACAATG AGCTTGATAT TGTGCTGACT
ACACCAGAGT TTTTCTCGCT CCATGCTGAT CAGTTTGCTG CAGCGCATAA CATTTCGTTT
GTGGTGTTTG ACGAGGCCCA TCACGTGGGA ATGAATGCTT CTGAGGGCAG ACTCGCCTAC
GCACAGATGC CACAGGTACT TAAGATGCTT GGAAATCCTC AGGTACTTGC CACAACGGCT
ACGGCTACCA CGCAGGTAGC CCAGCGTATC TGTGAACTTC TCTCTATTGA TGCAGACCAC
GTATATAAAG ACAAAACTGC TCGTACTAAC CTTGAACTTA AGGATCTTCG TAGTGCAAAA
GATAGAGAGT GTGCTCTACT TTCTCTTGTG TCTGATGGCA CAAAGACGGT TGTCTACGTT
AATTCAAGGG AGCAAGCGCA GGCTTTGACG CGCATGCTGC GTCATCGCAT TCCAGAAATT
GGTCATAAGG TTGCGTTTTA TCATGCGGGT TTAACGCCTC AGATACGTAA GAACGTTGAA
CGTGCATTTA GACGCGGTGA CGTTTGCTGC ATTATTGCTA CAAGTGCGTT TGGCGAGGGC
GTTAATATCT CCGATATTCG CCAGGTCATT TTGTATCACC TGCCGTTTGG TCGTGTTGCA
TTTAATCAGA TGAGTGGACG TGCAGGTAGA GATGGCAAGC CTTCTAAGAT TTATATGCTT
TTTGATGCAC ATGATATGCG CGTTAACGAG CGTATTCTTT CTTCTCGTGC GCCTCAGCGA
GAGGCCCTTG TTGCAGTTTA TCGTGCGCTT ACTGCATTGC AACCAAAGCT TGTCGCACAG
CCAACTAATC CCGCACTTAC TGATGAAGAT ATTGCACAGA TGGCGCTTGA AATTGATCCA
AGATCTAAGG CCGATGAACA AATCGTTCGT GTTGCACTTG ACGTTTTTGT TGAGCTAGGG
TTTATTAGCA TTGAGGGATT TGATCAAACA CGAGTAATTT CCGTCAATAG TCAAGCTTCG
CACATGGACT TGTTGGAGTC TGCTCGCTAC GCTGAAGGAC TTAAAGCGCA CACTGAGTTT
GAATCATTTG CTCAGTGGGT CTTTTCTGCT TCACTAGATG AGCTGGCAGA TGCTATAACA
AAACCCATCG TTCCAGAGAT TGGTCCAATA TTTGATGGGG GGAGGGAGTC CTCTAATGAG
TGA
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| Protein sequence | MPGIEKSTRW SVLTQDVYLE SLFEKELHVT PLVARVLVAR GFTDVAEAQE FLSPSLQRDW
LDPQCIPGMA EVANRVQKAI VEQQKIAVFG DFDVDGMSST CLLTLALRRL GADVLPYIPH
RFGEGYGLSK EALARVLLDR KPDLIITVDN GIAAAQEVAW LLEQGIDVVI TDHHEPADLV
PQGVPVTDPK LIEDCPSREL AGAGVALKLV QVLGQLQNQP QLWLDYIDVA MLGTLSDMMM
LNKENRALVS EGVKRLQKGL RPGLVALAAV AGQDIAQISA DNLPFSIIPR LNAAGRMGTT
DIALDLLLTE DAEEATILAG KLEEINAERR AIEAKLTDEA LEQAKEIYDG GHAIVLAKEG
WHEGVKGIVA SRIVNRYHVP CILFTIQDGV ARGSGRSVGS VDLFHAVEQC ADLTVRFGGH
QGAVGVTVET SKIDAFRKRL SEVMAELPEE EFESSGEVTA LVNLDEITIN SIDALEALQP
FGQGNKKPLF GVKGVVMKNR SRVGAGGAHL CFMASNGISS ISSIMFRTPH VEAAAEYDGA
VDLIFEAVNE TWQGRTKPKL MVRDILYRDF TDEDDGPIEA DLLGSAVDLP LVVTKEATET
EEASQEQSQQ KRHELESLPY EELTQTLVTS MIGSRELLPL QKKTLEVLSQ GESCLSVMAT
GRGKSLIFQV YAACVALLQH KMSVFVYPLR ALINDQVQSM KNTFEPLGIS VEVLNGETDL
TSREDLFARM ANNELDIVLT TPEFFSLHAD QFAAAHNISF VVFDEAHHVG MNASEGRLAY
AQMPQVLKML GNPQVLATTA TATTQVAQRI CELLSIDADH VYKDKTARTN LELKDLRSAK
DRECALLSLV SDGTKTVVYV NSREQAQALT RMLRHRIPEI GHKVAFYHAG LTPQIRKNVE
RAFRRGDVCC IIATSAFGEG VNISDIRQVI LYHLPFGRVA FNQMSGRAGR DGKPSKIYML
FDAHDMRVNE RILSSRAPQR EALVAVYRAL TALQPKLVAQ PTNPALTDED IAQMALEIDP
RSKADEQIVR VALDVFVELG FISIEGFDQT RVISVNSQAS HMDLLESARY AEGLKAHTEF
ESFAQWVFSA SLDELADAIT KPIVPEIGPI FDGGRESSNE
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