Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0515 |
Symbol | |
ID | 8413366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 594261 |
End bp | 595154 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 645022085 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_003179537 |
Protein GI | 257784320 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00442329 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATATGA AGAACATAAC TGGTGCAATT ACCGCATTAG TAACCCCATT TGATGCTCAA GGAAATGTTG ATTTTGAGGC ACTTGAGCAC TTTGTTGACT TCCAGATTGA ACAGGGAATT GACGGTATTC TCGCTCTAGG CACTACCGGA GAGTCCTCAA CCATGACAGA CGAGGAGGAC ATCGAGGTAG TCAAGACAAT TCTTGCACGA GCCCAGGGTA GAGTCCCTGT TATCGGTGGT GCTGGTTCCA ACTCTTCTGC TGAGTCTTTG CGCAAAGCAG AAGCTCTTGA GAAGGCAGGT GTTGATGGTC TGCTACTGAT TACTCCTTAC TACAATAAGA GTAATGAAGA GGGCATCTAC CAGCACTTCT CGTATGTACT AGACCGCGTT GATGTCCCTT GTATCTTGTA TAATATCCCC GGTAGAACGG GCTGCTCAAT TTCTGAACGC AACGTTCAGA GACTTGCAGC ACATCCAAAT GCATGGGGTA TTAAAGAGGC TTCTGGAGAC ATTGCATATG CAACAAGGGT TGCTCGTTAT TTGAGCGATG ACTTTACTAT GTGGTCAGGA AATGACGACA TGATTGTGCC TTTGCTTTCT CTTGGTGCTT CCGGTGTTAT TTCTGTTTGG TCTAACCTTG ATCCAAAGAT GGTTCATGAC CTGGTAGCTG CGTGGCATCG CGGAGAGATT TCTCTTGCCC GTGAGCTGCA ACTTCAGTAT CTTGACCTGG TCCATGCACT TTTCTGCGAG GTTAATCCAA TTCCTGTAAA AGCCGCGCTG GCTCGTATGG GACTTATGGA AGAGAATTAT CGTCTGCCTC TGTGGAAGAT GACGGAAGAG CACGCTGAGG TGCTTGAAAA TGCTATGAGA AAGGCTGGTC TTCTTGATGC CTAG
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Protein sequence | MDMKNITGAI TALVTPFDAQ GNVDFEALEH FVDFQIEQGI DGILALGTTG ESSTMTDEED IEVVKTILAR AQGRVPVIGG AGSNSSAESL RKAEALEKAG VDGLLLITPY YNKSNEEGIY QHFSYVLDRV DVPCILYNIP GRTGCSISER NVQRLAAHPN AWGIKEASGD IAYATRVARY LSDDFTMWSG NDDMIVPLLS LGASGVISVW SNLDPKMVHD LVAAWHRGEI SLARELQLQY LDLVHALFCE VNPIPVKAAL ARMGLMEENY RLPLWKMTEE HAEVLENAMR KAGLLDA
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