| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0514 |
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| Symbol | |
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| ID | 8413365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 592941 |
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| End bp | 594245 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645022084 |
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| Product | Diaminopimelate decarboxylase |
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| Protein accession | YP_003179536 |
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| Protein GI | 257784319 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00534186 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAGTAAGA AACCGTTTGT TTCTGCAGAT GCCCTAGAGG TAATTACTAA GACGTATCCA
ACGCCATTTC ACTTGTATAA CAAGGCAGAG ATTGTTCGCC GAGCAAAGCT TTTGCAAGAG
GCTTTTAGTT GGAATACTGG CTTTAAAGAG TACTTTGCCG TGAAGGCCAC GCCAAACCCT
TACATTGTGA AGTTGCTGGC AGAGCTTGGT TGCGGCTGTG ACTGCGCAAA TGCTACAGAG
CTTACCCTTG CAAAAGCCTG TGGAGTTACA GGTCAAAACA TTATGCTCTC GTCAAACGAC
ACTACGGTGC TTGACTTTGC ACGCGCTCAT GAGCTGGGAG CCATTATCAA CTTAGATGCT
GGCGGCGATA TGCTTACAAC GCTTGAAGAT GCGGTGGGAA GTACTATGCC TCAGGTTATG
TGCGCACGTC TTAATCCTGG CGGTGTGTTT GAGTCGCAAA ACGGCATTAT TGGAAATCCC
GATGATGCTA AGTTTGGCAT GACAGAAGAG CAGCTTTTCC AGACGTTTGC GTACCTTAAG
ACTAAAGGTG TTACTGAGTT TGGTCTTCAT GCATTCCTGG CTAGTAATGC TCAAGAAGAA
GATTACTATC CAAACCTTGC GCGCGTTCTC TTTGAGCTGG CTGTTAAGCT GCATAGAGAA
CTTGATATTC ATATTGGATT TATTGATCTT TCTGGTGGCA TTGGCGTGGC GTATGAGCCA
AATCAGGTTG AGCCTGATGT CTTGGCCATT GGTCAGGGCG TAAAGTGTGC TTTTGAAGAG
GTCTTGGTTC CCGCTGGCAT GGGCGACGTT TCCATTTACA CCGAGCTTGG TCGTTGGCTT
TTGGGTCCCG CTGGCGCACT TGTTACCCGC GTTTTGCACC AAAAAGAGAC ATATCGTCAC
TACCTTGGCG TGGACGCTTG TGCGGCAAAT CTCATGCGTC CTGCAATCTA CGACGCCTAC
CACCACATCA CCGTTATGGG CAAAGAGGAT GCTCCTGCAA CACATACGTA CAACGTTGTG
GGTGGACTTT GCGAGAATAA CGATCAGTTT GCAAAGAATC GCCAGCTCCC AAAGGTGGCT
GTGGGTGACC TCTTGTTTAT CCACGATACC GGCGCACATG GTTTCTCGAT GGGCTATAAC
TACAACGGTC GTCTTCGCTC CGCTGAGCTG CTGCTTCTAG AAGATGGATC TGTGCAACTC
ATTCGTCGCG CTGAGACAGA GGCTGATTAC TTTGCAACGC TTGCATTTGA CGGCTCAGAC
TTTTCAGATC TTGCACAACA AACATCTATA AACACCACAC GTTAG
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| Protein sequence | MSKKPFVSAD ALEVITKTYP TPFHLYNKAE IVRRAKLLQE AFSWNTGFKE YFAVKATPNP
YIVKLLAELG CGCDCANATE LTLAKACGVT GQNIMLSSND TTVLDFARAH ELGAIINLDA
GGDMLTTLED AVGSTMPQVM CARLNPGGVF ESQNGIIGNP DDAKFGMTEE QLFQTFAYLK
TKGVTEFGLH AFLASNAQEE DYYPNLARVL FELAVKLHRE LDIHIGFIDL SGGIGVAYEP
NQVEPDVLAI GQGVKCAFEE VLVPAGMGDV SIYTELGRWL LGPAGALVTR VLHQKETYRH
YLGVDACAAN LMRPAIYDAY HHITVMGKED APATHTYNVV GGLCENNDQF AKNRQLPKVA
VGDLLFIHDT GAHGFSMGYN YNGRLRSAEL LLLEDGSVQL IRRAETEADY FATLAFDGSD
FSDLAQQTSI NTTR
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