| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0503 |
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| Symbol | |
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| ID | 8413354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 578144 |
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| End bp | 579793 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645022073 |
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| Product | L-serine dehydratase, iron-sulfur-dependent, alpha subunit |
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| Protein accession | YP_003179525 |
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| Protein GI | 257784308 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00718] L-serine dehydratase, iron-sulfur-dependent, alpha subunit
[TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit
[TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.742023 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCTA TGTCTGCGTT TGAGGTTTTA GGCCCCATTA TGGTGGGTCC TTCTTCCTCG
CACACAGCAG GAGCCCTACG CATTGCCCTA GTTGCACGCT CGCTTGCACC AAAGCAGCTG
GAGCACGTTG AGTTTTGGCT CTACAACTCC TTCTCTCATA CCCATCTTGG CCACGGCACC
GATTATGCTC TCATTGCAGG CATCTTGGGC CTTGCGCCAG ACGATACTCG CGTCCGTGAA
GCACTTGCCT TGGCAGAAGA AGCCCACCTC AACTACAGCG TTATTGAAAA GGGTGATGAC
GAAACCCTTC ACCCAAACAC CGTAGAAATT CACCTCTACG GCGCAGATAA CGCCCACGTC
TCCGTTATGG GTGAGTCTGT TGGTGGTGGC CGTATTCGCA TCTCTGGCGT TAACGGAGCA
CGTATTCACA TGTCCGGTGA TATGCCCACT ATCTTTGTTT CGCATCGCGA TAAACCCGGT
GTTCTTGCAG CTCTCACTAC TATTTTGGCT ACGCAAAATA TCAATGTTGC AACTATGCGC
ACCTTCCGCT CAGAGCGCGG CGGCTTTGCT CACACCGTCT TTGAGATTGA CGAGCCTATT
GAGCAGAAAG TCTTAGACCT CTTTCAGCTA GCGCCTCATG TTTCGTACGC TGCTCAAGTT
TCTATTCCAG GAGCAGCTCC ACAGGTCACA AACGACGTAC TTTCGGGAGC CTTTGACAAC
GGCGCAGATC TTCTCGCCAG GTGCTCCAAG ACGGGAGCCT CCATTGGCCA AATTATGCGC
CAGCGCGAGA AGGGCTTGCG ACCAAATGCT AACGTAGACG CAGAGATGAC TCACGTTCTT
GAAATTATGC GTGATGAGGT TCACGACACC ATCAAGACGC CTCGTCAGTC AATTGGTGGC
CTGCTCAATG GCCAAGCCAA AACCGTAGCC AATACCCCGC CTGCAATCTC GAACACGCTT
ATGGGCACCA CACAAACGCG AGCTATTGCA TACGCTATGG CTGTTCTTGA GCGCTCGGCA
ACCATGGGCG TTATTGTTGC TGCTCCTACC GCAGGAGCAT CTGGTGTTGT ACCGGGATCG
CTCATCTCTG TTGCAGAAGA GATTGGCGCC ACAGATGAGC AAGTTATCTC TGCGCTTTGG
AATGCAAGTG CTATTGGTGC CATCTTGACC ACCAACGCAA GTGTTTCTGG TGCTGAAGGC
GGCTGTCAAG CAGAGGTCGG ATCTGCTGCC GCGATGAGTG CATCTGCACT AACCGAGCTT
TTGGGCGGCA CTCCTCAGCA ATGCTTAGAC GCAGCTTCCA TTGCTATCTC TAACCTTTTA
GGACTAATCT GTGACCCTGT CAGAGGATTG GTTGAGTATC CTTGTCAGGA TAGAAACGCC
ATTGGTGTAG CCGCAGCTAT AAGTTCTTCT CAGCTTGCTC TTGCAGGCGT TGGTAACCCA
ATCCCGTTTG ATGAGGTTGC TCATGCTATG GCAGAAGTAG GTGCCGCACT CCCCGTTTCA
CTCAGAGAAA CAGCTAAAGG CGGTCTTGCA GCTACTCCAA GCGCTCCTAC CGCATGTGCA
AGCTGTACGG GTTGTGTTTC TCTAGACCAG ACACTTCTTG ATGCAGAGCG CATACTCAAC
GCAAACAACA AAGACGTTCC TTGTGCTTAA
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| Protein sequence | MISMSAFEVL GPIMVGPSSS HTAGALRIAL VARSLAPKQL EHVEFWLYNS FSHTHLGHGT
DYALIAGILG LAPDDTRVRE ALALAEEAHL NYSVIEKGDD ETLHPNTVEI HLYGADNAHV
SVMGESVGGG RIRISGVNGA RIHMSGDMPT IFVSHRDKPG VLAALTTILA TQNINVATMR
TFRSERGGFA HTVFEIDEPI EQKVLDLFQL APHVSYAAQV SIPGAAPQVT NDVLSGAFDN
GADLLARCSK TGASIGQIMR QREKGLRPNA NVDAEMTHVL EIMRDEVHDT IKTPRQSIGG
LLNGQAKTVA NTPPAISNTL MGTTQTRAIA YAMAVLERSA TMGVIVAAPT AGASGVVPGS
LISVAEEIGA TDEQVISALW NASAIGAILT TNASVSGAEG GCQAEVGSAA AMSASALTEL
LGGTPQQCLD AASIAISNLL GLICDPVRGL VEYPCQDRNA IGVAAAISSS QLALAGVGNP
IPFDEVAHAM AEVGAALPVS LRETAKGGLA ATPSAPTACA SCTGCVSLDQ TLLDAERILN
ANNKDVPCA
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