| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0498 |
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| Symbol | |
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| ID | 8413347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 568367 |
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| End bp | 570547 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 645022066 |
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| Product | YhgE/Pip C-terminal domain protein |
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| Protein accession | YP_003179520 |
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| Protein GI | 257784303 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1511] Predicted membrane protein |
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| TIGRFAM ID | [TIGR03061] YhgE/Pip N-terminal domain
[TIGR03062] YhgE/Pip C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.325694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA TTTGGACTAT TTTTCTTGCT GATTTTAAGG CTGTTGCACA CAACACCATT
GCTCTTGTTG TATGCGTGGG GCTAGTAATA CTGCCATCTT TATATGCATG GCTTAATATT
GAGGGTAGTT GGGATCCATA CGGACACACC AATGAAATAA AAATTGCTGT TGCTAACAAT
GACGCAGGAT ATCAAAGCGA TCTTATTCCT GTACGCGTCA ACATTGGTGA ACGTATGGTA
TCTAAACTTA GTGAAAGCAC CACTATTCAC TATGTTATTA CTTCAAAAGA AGACGCTGAA
CACGGTGTGC AGTCCGGCGC ATATTACGCA GCGCTCCTCA TTCCAGAGAA TTTTTCGCAA
GAGTTACTTG CTTCACTTTC TGGCCAAGAA AATGATGCCA GTATTACCTA TCTAAGCAAT
CAAAAACTGG GAGCAATCGC ACCTATTGTT ACCGATAAAG CTGCAGAATC TGCACGTACA
GAGATTGAAC GATCTTTTGC AGAGTCAGTT ACTGAAGTAG GCGCAGGTCT TATTGGTGAA
CTCACTAATA ACGCGGATGA TTCTAATCTT TCTTCTGTAG TAACCAAGCT TGATGAGACT
CTTGTTCATG GATCTAATGA GCTCAGAATT GCTGCTAATC ATATTGGTGT ATATCAGGGA
CTTGTTGATT CAGCTCAACA AATTATTGAG AGCACATCTG ATTTATCCTC AAGCTCAAGT
AATACACTCT CCTCAGCACA AGAAACACTT CTACAAGCAG CTGATGGAAC GCAACGCATG
AATGACGCAG CAACAAGCGC TACTCAAGCA GTAGATAGCG CACTTGCCCA AACTTCTGCA
AGCTTTGATA CGCTTAATAC TTCTATTAAT GATGCGCTTG ATAATGCTTC GACAACTGCA
GGCCATGCCG CTTCTAATAT TCAAGATGCT GCAAGTAGAA TCGAGCAAGT AAAGAGTGGT
TATGAATCGC TTCTTACCTC TCTTCAGTCA GTTAAAGCAG CCCTTCCAAC AAACCTACAA
GGACTTCTTG ATGCTCCAAT TGCCAGGCTT CAGGGGAGCA TTGCCACCCT CCAAAATCTT
CAAGATGAGC TAACAAATGC TGCCCAAAGT ATTAATGATG GTATATCCGT CTCTGCAACA
CAAAGAGCTC AAATCAATGC GCTCCTATCA CAAGCATCTT CTGACTTGAG TACTACACGT
TCAGACCTCC AAACAGCTCT TAAAACAAGC CTCACATCAA TCTCTACATC TCTAACTGAT
GTTTCTAATA CCACTTCTAC TCTTTCTGAA TCTTTAACTC AAACACTTCA AGACATTCAA
AACATCGCAA ATTCAACAGC AAACAACCTC TCAGCATTCT CCAGCACTCT TTCTAAGTCT
AAAAATCAGC TTACTGATCT TGCCGACAAG CTTGATTTAA TACACGCTCA ACTCTCTGAG
GCACTTTCCA GCAAAGATAT AAAAACTGTC AGGCAGATTC TATCTGCAAG TTCATCTGAT
CTTGCAGAAT TTATTGCTGC GCCTACAACA CTCAAGCGAA CTGCCGTATA CCCTATTGAA
AACAACGGAT CGGCCATGGC GGGTTTCTAC ACCACACTTT CTTTGTGGGT AGGTGGCATC
ATTTTAGTTG CCATGCTTAA CACAGGGATT ACTGAGAGTC TCCTTAAGAA AACTGACGCA
AAACCACGTC ATGCATATCT TGGAAGATTG CTTACCTTTA GCGTACTAGG CTTCTTACAG
TCCACGTTAG TTGGACTGGG CGATCTTTTC TATCTGCAGA TTCAATGTGT TGACCCTGTA
CGTTTTATGA TAAGTGTTTG GTTTACCTCA CTTGTATTTG TCAACATCAT GTACGCATTT
ACCTATGCGT TTGGTGATAT TGGAAAAGCA ATTTGTGTCT TCTTACTTGT TATCCAAGTT
GCAGGTGCAG GCGGAAGCTT CCCCGTCCAA ATGCTTCCTG AATCTTTCCA AGTTATAAAT
CCACTTCTTC CCTTTGTTCA TGCCATTGCA GCAATGCACG AAAACATAGC AGGATACTAT
AGCAACGTAT GGATTTCTGA ACTTGGTGCA TTATCTATCT TCCTTGCAGC CTCCCTTATG
CTTGGCCTTG TTCTTAGAAA GCCAACTGCA AAACTTAATG CCTGGATTAT AGAAAAACTT
GAGGATACTA AGATTATGTA A
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| Protein sequence | MKKIWTIFLA DFKAVAHNTI ALVVCVGLVI LPSLYAWLNI EGSWDPYGHT NEIKIAVANN
DAGYQSDLIP VRVNIGERMV SKLSESTTIH YVITSKEDAE HGVQSGAYYA ALLIPENFSQ
ELLASLSGQE NDASITYLSN QKLGAIAPIV TDKAAESART EIERSFAESV TEVGAGLIGE
LTNNADDSNL SSVVTKLDET LVHGSNELRI AANHIGVYQG LVDSAQQIIE STSDLSSSSS
NTLSSAQETL LQAADGTQRM NDAATSATQA VDSALAQTSA SFDTLNTSIN DALDNASTTA
GHAASNIQDA ASRIEQVKSG YESLLTSLQS VKAALPTNLQ GLLDAPIARL QGSIATLQNL
QDELTNAAQS INDGISVSAT QRAQINALLS QASSDLSTTR SDLQTALKTS LTSISTSLTD
VSNTTSTLSE SLTQTLQDIQ NIANSTANNL SAFSSTLSKS KNQLTDLADK LDLIHAQLSE
ALSSKDIKTV RQILSASSSD LAEFIAAPTT LKRTAVYPIE NNGSAMAGFY TTLSLWVGGI
ILVAMLNTGI TESLLKKTDA KPRHAYLGRL LTFSVLGFLQ STLVGLGDLF YLQIQCVDPV
RFMISVWFTS LVFVNIMYAF TYAFGDIGKA ICVFLLVIQV AGAGGSFPVQ MLPESFQVIN
PLLPFVHAIA AMHENIAGYY SNVWISELGA LSIFLAASLM LGLVLRKPTA KLNAWIIEKL
EDTKIM
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