| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0483 |
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| Symbol | |
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| ID | 8413332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 551877 |
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| End bp | 553280 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022051 |
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| Product | UDP-N-acetylmuramoylalanine/D-glutamate ligase |
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| Protein accession | YP_003179505 |
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| Protein GI | 257784288 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTCGCTTC TAGAAACACT TGGTGATGTG TGTGTTCTTG GTTTTGGTAA GACCGGCGTC
TCTGTCTGTG CGTACTTGCT GCAGCAGCCA GAAGGTCGTG TGTCTTCCAT AACCCTTGTG
GGCGGCGCAG ATGCTACTGT TGGCGAGAAG GTCCAAGGGC TTGCAGACTC AGGCGTGCAG
GTTCAATGCG GCTCTGATCA GGTTGAGGGC ACCTTTGACC TGACCATTGC GTCTCCTGGT
ATCCCAGATA CCTCTGAGCT GTTCCTAAGT GCAAAGGCTG CCTCTAAACA GATATTAGGA
GAGCCAGAGT TTGCCTATCA AGAGAGTCCT ACTCAATGGA TTGGTATTAC CGGTACAAAT
GGTAAAACAA CTACTACAAG TTTAACCACG TCTATCCTGC AGTACGCTGG CCTTGATGCA
TGTGCTGTTG GAAATATTGG GTTTACTATT ACTGATCAAC TTTCAGAGAG AAAATCTAAT
AGCTGGTTTG TTGCAGAGCT TTCAAGTTTC CAACTTGCAA CTACTCAGAA ATTGCATCCT
CATGTTGCTA TGCTTTTAAA CATTACGCCT GACCACCTTG AATGGCATGG TTCGCTCGAG
GCATACGCTG CGGCTAAAGA GAAAATTTTT GCCAACCTTG ATGTAAATGA TTTGGCAATT
GTGTCTGATT TAGATGAGTT TTGCCTAGCT GTGTCTTCTC GCCTTGAGGC TCGTGGCATT
AGCGTATGTC ATCTTGCTCA GACAGATCCT GGTACACAAA ATGCTGCCTT TGTACGTAAT
GGCGCACTGG TAGTAAGGTT GTCTGGTAAG GAGATGGAGC TTGTAGCTAC AGATGCACTT
CACATTAGAG GAATGCACAA TGCACTCAAT GCTCTTGCTG CGGCCGCTTG TGGGCTATTT
TTGGGCATTG ATATTGTGTC GATTAGGCAT GCCCTTTTGG ATTTTATGCC GCTTGAGCAC
AGAATTGAGC CTGTAAAAAC CATTAATGGC GTGTTGTACG TAAATGATTC CAAGGCAACC
AATACCGATT CGGTTGAGAA GTCTCTGACA TCGTTTCCAG ATAAAGACAT AATTTTGCTT
CTTGGTGGTC ACGATAAGGG CACAGAACTG GATAAATTTG CTCAGAAAGT GTCTGCTACC
TGTGCATATG CAATCTGCTT TGGAGAAGCT GGTCCTCGCT TTGCAGAAGC ACTTCGCCAC
GTTTCTGGCG GACGTGCAGA AGTGGTAGAG GAGCCTCATC TACGTGAGGC CTTTGCCCAC
GCAGTAGAAC TTGCTCGCCC AGGTTTTGTA GTACTTCTCT CGCCTGCGTG CTCATCATTT
GATGAGTTTT CTGGCATGGC TCAGCGTGGT CATGTCTTTA AACAGCTGGT GGAAGATCTT
GCTCAAGAAG AGAGTGGTCG ATAA
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| Protein sequence | MSLLETLGDV CVLGFGKTGV SVCAYLLQQP EGRVSSITLV GGADATVGEK VQGLADSGVQ
VQCGSDQVEG TFDLTIASPG IPDTSELFLS AKAASKQILG EPEFAYQESP TQWIGITGTN
GKTTTTSLTT SILQYAGLDA CAVGNIGFTI TDQLSERKSN SWFVAELSSF QLATTQKLHP
HVAMLLNITP DHLEWHGSLE AYAAAKEKIF ANLDVNDLAI VSDLDEFCLA VSSRLEARGI
SVCHLAQTDP GTQNAAFVRN GALVVRLSGK EMELVATDAL HIRGMHNALN ALAAAACGLF
LGIDIVSIRH ALLDFMPLEH RIEPVKTING VLYVNDSKAT NTDSVEKSLT SFPDKDIILL
LGGHDKGTEL DKFAQKVSAT CAYAICFGEA GPRFAEALRH VSGGRAEVVE EPHLREAFAH
AVELARPGFV VLLSPACSSF DEFSGMAQRG HVFKQLVEDL AQEESGR
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