| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0481 |
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| Symbol | |
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| ID | 8413330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 549380 |
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| End bp | 550816 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022049 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamin opimelate/D-alanyl-D-alanylligase |
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| Protein accession | YP_003179503 |
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| Protein GI | 257784286 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAGC TTTCGGTTGA ACAAATAGTC GCAGCTACTC ATGCTCAGCT GCTCCATCGC
GGAACTCGCG AGGTTGCGGG CTGCGCTGTG ATTGACTCTC GCGAGGTTCA GCAAGGCTCG
CTCTTCGTGG CCTTCGCTGG CGAGAAGGTC AATGGAAACT CGTATCTTTT ATCTGCTGCT
CAGGCGGGCG CTGCTGTTGT TGTGGCATCA GAACCTGTAA CAGACAATCT GCTTGACAGC
CTAGCCGCCA CAGGAGCTAG TGTTCTTGAA GCCGCTGATG ATGACTGTGA GGCGTTTTTG
CTTGCTCTTG CCGCTGCTTG GCGAGAAGCA CATCCAAACT GGCTGGTTGT GGGTGTAACT
GGATCAGTTG GTAAAACTAC CACCAAAGAA ATGCTTCGTC GCGGCATTGG CGCTACTCGT
CGTGTGCATG CTACCGCCGG CAACCATAAC AACCTTATTG GTCTGCCACT TACGGTACTT
TCAACTCCTG AAGACACCGA GGTTCTAGTG CTTGAGTTGG GCATGAATCA TGCTGGCGAG
ATTACCAGGC TCACTTCTGT TGCTCGTCCA ACTGTGGCGG TCATTACAAA TGTTGGTACC
AGCCACATTG GTCTTCTCGG CAGCCGTAAA AACATTGCGC GTGCCAAGGC AGAGATTGTC
TCTGGCATGC GAGCATTTGG TTCAATTGAA CCTACGCTTA TTCAGGCCTC GGCAGGGGAT
TACACCAAGT TCATCGCAGA CAAGTTTGCT CGTCCTGCTC GCGTTGTTTG CAAGACCGTG
GGTGCTACAG AAGATGATGT CATGAGTGCT CAGAAGGTCA TTCTTGACGA GAAAGGCCTT
CCAACAGCCA CTATTAGTGC ATCTTCTGGC TGGTCACGCA CAGTAACCCT TGAGGTACCT
GGTCGCGTTG TTGTCGACGA CCTTCTCTTG GCGCTTGAGG CTGTAGAGAC GCTTGGCCTT
GATCTTGATG CTGCAGCAGA GGCAATTGAG CAGATGCCAG CTACTCGCAT GCGTCTTTCG
GTACTTGATG CTACCTGTGG TGCCAAGATT ATTGATGACT CTTATAACGC AAGTCCAAAC
TCAACAGCTG CTGCTCTTGA TGTTTTAATG CAGATGCCCG CAGAGGGTCG TCGCATTGCG
CTCATTGGAG AGATTGGTGA GCTTGGACCA GAAGAGAAGC GCCTTCATGG ATATGTGGGT
GCCTATATTG CTGCTAAGAA CCCAGATTTT GTTGCTTTTG TAGGCACAGG AGCAGCACGT
GAAATGGTTG AAGCAGCGCG CGTTATGGGC TTCTCGGAAG ATAAAATTGA ACAGTTTAAT
GATGTTAATG AAGCGCTTGC CGTACTCGGG CCAGTACTGA AACAAGGAGA TGTTCTTCTC
GCCAAGGCAT CTAGGTCTGC CCAGCTTGAT ATTTTTGTCA AAGGAGTTAC CGAGTAA
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| Protein sequence | MVKLSVEQIV AATHAQLLHR GTREVAGCAV IDSREVQQGS LFVAFAGEKV NGNSYLLSAA
QAGAAVVVAS EPVTDNLLDS LAATGASVLE AADDDCEAFL LALAAAWREA HPNWLVVGVT
GSVGKTTTKE MLRRGIGATR RVHATAGNHN NLIGLPLTVL STPEDTEVLV LELGMNHAGE
ITRLTSVARP TVAVITNVGT SHIGLLGSRK NIARAKAEIV SGMRAFGSIE PTLIQASAGD
YTKFIADKFA RPARVVCKTV GATEDDVMSA QKVILDEKGL PTATISASSG WSRTVTLEVP
GRVVVDDLLL ALEAVETLGL DLDAAAEAIE QMPATRMRLS VLDATCGAKI IDDSYNASPN
STAAALDVLM QMPAEGRRIA LIGEIGELGP EEKRLHGYVG AYIAAKNPDF VAFVGTGAAR
EMVEAARVMG FSEDKIEQFN DVNEALAVLG PVLKQGDVLL AKASRSAQLD IFVKGVTE
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