| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0476 |
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| Symbol | |
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| ID | 8413325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 544328 |
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| End bp | 545236 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022044 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_003179498 |
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| Protein GI | 257784281 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACCTCG CTCAAGCGCG TACAGAATAT ATAGCGTACG TTGCTGTTGA GCGAGGTCTT
TCTGTAAATA CGCTTGATGC TTATACCAGA GATTTAGAGG GCTATTTGTT CTGGTTGAGC
GGCAAAAAAA TTACTTCACC CAATCAGGTG ACTCGATCCG ACGTAGAAGA GTACATTGGT
TCTCTCAGAG ATTTAGGTAT GGCTCCAGCT TCAGTTGAGC GTCATACTGC AGCAATTAGG
AATTTTCACA AGTTTATGGC TGTTGAGCAA ATTTGTGAGT CTTCGCCAGC TGAAGATTTA
CCTACTACAG CAAGAATTCA AAGGCTTCCT GACGTTATTT CTCAAGAGAA GGCAGAAGAA
CTTCTTGATC AACCGTTTCC TAATTCGCCT CTAGGTATTC GCGATAAAGC AATACTTGAG
TTGTTGTATG GATGTGGACT TCGCGTGTCT GAGCTTTGTG ATCTTGAAGT ACGTGGAGTC
CTTTTAGAAG ATGAACTCTT ACGTGTTTTT GGAAAGGGCT CCAAAGAGCG CGTAGTTCCC
GTATTGGGCT CTGCATATCG TGCGCTTAAA ACATATCTCT TTGAAGCTCG CTCTTTATTA
CTTAAGCATG GACAAGTGTC TGAGGTCTTT GTAAACGCTC GAGGTGGACG TATTTCTCGC
CAGTCGGTTC ATAAATTGGT GGCAAATTAC GGCAGGGTAG TGGGAATTGA AGGCTTACAT
CCTCATACAC TGCGTCATAG TTTTGCTACA CACCTTTTAG AAGGCGGAGC TGATCTTCGC
TCGGTTCAGG AGCTTTTGGG GCATGTAGAT ATTTCAACTA CGCAGCTTTA TACGCACGTA
GATAGGTCTC ACATTAGAGA TGTGTATCTT GAAGCTCATC CAAGAGCTCA TGTCCATGCG
GATAAATAA
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| Protein sequence | MDLAQARTEY IAYVAVERGL SVNTLDAYTR DLEGYLFWLS GKKITSPNQV TRSDVEEYIG
SLRDLGMAPA SVERHTAAIR NFHKFMAVEQ ICESSPAEDL PTTARIQRLP DVISQEKAEE
LLDQPFPNSP LGIRDKAILE LLYGCGLRVS ELCDLEVRGV LLEDELLRVF GKGSKERVVP
VLGSAYRALK TYLFEARSLL LKHGQVSEVF VNARGGRISR QSVHKLVANY GRVVGIEGLH
PHTLRHSFAT HLLEGGADLR SVQELLGHVD ISTTQLYTHV DRSHIRDVYL EAHPRAHVHA
DK
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