| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0464 |
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| Symbol | |
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| ID | 8413313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 533833 |
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| End bp | 534831 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022032 |
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| Product | Protein-N(pi)-phosphohistidine--sugar phosphotransferase |
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| Protein accession | YP_003179486 |
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| Protein GI | 257784269 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2893] Phosphotransferase system, mannose/fructose-specific component IIA
[COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB |
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| TIGRFAM ID | [TIGR00824] PTS system, mannose/fructose/sorbose family, IIA component
[TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000027828 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.826743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGTTAGTA TCGTTCTAGC CAGTCATGGT AAGTTTGCCG AGGGTATTAA AGATTCTGGC
AGCATGATTT TTGGACCACA GGAAGGCGTT GTAGCTATTA CGCTTACTCC TGATATGGGT
CCAGATGACC TGCATCAGAA GATTCTCGAC GCAATTACCA CGCTTGAAGA TCAAGAGCAC
GTTCTGTTCT TGGTTGACCT ATGGGGTGGC ACTCCCTTTA ACCAGATTTC TCGTGTTCTT
GAGGAGGAGG GTAAAGAAGA TTGGGTTGCT GTTACTGGTC TTAACCTCCC AATGCTTATA
GCAGCATATG GTTCTCGCCT TGGCGTAGAT ACCGCCACCG AGGTAGCAAA AGAGATTTTC
TCTGAAGCTC GTATGGGCGT AAAGATTAAG CCAGAAGAGC TTGAGCCACA AGAGGCAACA
CCTACTGATG TTCCTGCTGT TGCAACACCT AAGGGAGCAA TTCCTGTGGG AACCGTAATT
GGTGATGGCA AGCTTAAGAT TGTTCTTGCT CGTATTGATA CCCGTCTTCT GCATGGTCAG
GTTGCAACTA CCTGGACAAA GATGACCAAG CCAGACCGTA TCATTGTTTG TTCTGATGGT
GTTGCACAAG ATGAGCTTTG CAAGACCATG ATTGTTCAAG CAGCTCCTCC AGGAGTGCAC
GTTCACGTTG TTCCTATTAA GAAGATTATT GAGATTGCTC ACGATACTCG TTTTGGTAAT
ACCAAGGCAA TGCTCCTGTT CGAGACTCCT CAGGACATGC TTCGTGTCAT TGAAGGTGGC
GTAGAAATCA AGGAAGCTAA TCTTGGTTCT ATTGCTCACT CTGTTGGTAA GGTTGTTGTT
ACCAACGCAG TTGCTATGGA CGAAGACGAT GTAAAGACCC TTGAGGCTAT CCGAGAGTGC
GGTACAAAGT TTGATGTCCG TAAGGTTCCT GCAGACAGTG CAGAAAACTT TGATGCAATG
CTTAAAAAAG CTAAGTCCGA GCTTGCTAAT CGTAAGTAA
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| Protein sequence | MVSIVLASHG KFAEGIKDSG SMIFGPQEGV VAITLTPDMG PDDLHQKILD AITTLEDQEH
VLFLVDLWGG TPFNQISRVL EEEGKEDWVA VTGLNLPMLI AAYGSRLGVD TATEVAKEIF
SEARMGVKIK PEELEPQEAT PTDVPAVATP KGAIPVGTVI GDGKLKIVLA RIDTRLLHGQ
VATTWTKMTK PDRIIVCSDG VAQDELCKTM IVQAAPPGVH VHVVPIKKII EIAHDTRFGN
TKAMLLFETP QDMLRVIEGG VEIKEANLGS IAHSVGKVVV TNAVAMDEDD VKTLEAIREC
GTKFDVRKVP ADSAENFDAM LKKAKSELAN RK
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