Gene Apar_0446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0446 
Symbol 
ID8413295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp514746 
End bp515423 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content46% 
IMG OID645022014 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_003179468 
Protein GI257784251 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.95928 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTCG ATAACATTTT GCTCCAAGAA GGAGTGCTAA CGCGCCTTTT TGGAGGCCTT 
GCAACAACGG TGTACATTGG CCTTATCTCA GTGGTGCTCT CTATTCCTCT TGGTATTCTT
GTTGGACTTT TTATGACATC CAACAACAAG ATTGTTCGTA CACTTCTTCG TGTTTACCTT
GAGATTGTTC GAGTTATGCC TCAGCTGGTG CTGCTCTTTG TGGTGTTCTT TGGTACTTCT
GAATGGTTTG ATGTCAATTT TGATGGTATT GAGGCATCAA TTGTGGTCTT TACGTTTTGG
GGAGCTGCCG AGCTTGGAGA TCTGGTAAGA GGAGCGTTGG AGTCAATTCC GGCATCTCAG
TATGACGGCG CGTTTGTGCT TGGTCTTTCT CGCCAGCAGA CGTTCTTTCA GGTCATTTTG
CCTCAGGCAC TTAGGCGCCT TTTACCGCCA GCCATCAATC TGATTACTCG CATGATTAAG
ACGACGTCGC TTTGTAATTT GATTGGCGTG GTTGAGCTGC TTAGAGTTGG TAGTCAGATC
ACCGATTTTT ATCGCTTTAT GTTCCCAACC GACGGAGCAC TTTGGATCTA TGGAGCTATT
TTCTTCCTGT ATTTTGCTGC CTGCTTCCCA CTTTCGTATC TTTCACGCAG GCTTGAGAGG
AGTGCCTCAC ATGAGTAA
 
Protein sequence
MPVDNILLQE GVLTRLFGGL ATTVYIGLIS VVLSIPLGIL VGLFMTSNNK IVRTLLRVYL 
EIVRVMPQLV LLFVVFFGTS EWFDVNFDGI EASIVVFTFW GAAELGDLVR GALESIPASQ
YDGAFVLGLS RQQTFFQVIL PQALRRLLPP AINLITRMIK TTSLCNLIGV VELLRVGSQI
TDFYRFMFPT DGALWIYGAI FFLYFAACFP LSYLSRRLER SASHE