| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0445 |
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| Symbol | |
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| ID | 8413294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 514106 |
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| End bp | 514759 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022013 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_003179467 |
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| Protein GI | 257784250 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACTGGA GCTTCATAGG GGAACATCTC CCACTGTATG CAGAAGCTGC AAAAATAACA
CTAACCATCT CTTTCTTTGG AGTTATCTTC TCGCTTATCG TTGGTTTGAT AAGTGCTCAG
ATTTCGCTGT CAAAAATTCC TATTTTGAGT CAGCTTAATT CTGTTTACGT GGAGCTTTCC
AGAGGAACAC CCCTGCTTAT TCAGCTGTTT CTTATCTACT TTGGTCTGAC TAAAGTTGGT
CTCAAAATGG ATGCAGAGGC AGCTGCTGTT GTGGGTCTAA CGTTTCTTGG CGGTTCCTAT
ATGGCAGAGG CGTTTCGTGC AGGTTTTGAA TCAGTTGCAG CTATTCAGTT TGAATCTGCA
CAGGTTTTGG GCCTCTCAAA GATTCAAACT CTTCAGCACG TTATTCTTCC ACAGGCGCTT
TCTGTGGCAG TTCCTGGTTT CGTTGCTAAC GTTATTTTCT TGATCAAGGA ATCCTCCGTT
GTCTCCGGCA TTGCCCTTGC AGATTTGATG TATGTAACCA AGGACATTAT TGGCATGCAG
TACGACACTA CAGAAGCTCT CTTTATGCTG GTTATTGCTT ATGTGATTAT CCTTGTTCCT
ATTTCTTTAA TTGGAAGCTG GCTAGAGAGG AGGCTTGACT ATGCCCGTCG ATAA
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| Protein sequence | MDWSFIGEHL PLYAEAAKIT LTISFFGVIF SLIVGLISAQ ISLSKIPILS QLNSVYVELS
RGTPLLIQLF LIYFGLTKVG LKMDAEAAAV VGLTFLGGSY MAEAFRAGFE SVAAIQFESA
QVLGLSKIQT LQHVILPQAL SVAVPGFVAN VIFLIKESSV VSGIALADLM YVTKDIIGMQ
YDTTEALFML VIAYVIILVP ISLIGSWLER RLDYARR
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