Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0405 |
Symbol | |
ID | 8413254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 467169 |
End bp | 467987 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 645021973 |
Product | Integrase catalytic region |
Protein accession | YP_003179427 |
Protein GI | 257784210 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0876667 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTATCTA CTGGAGTGCT CAGGACTTGC AAGGGCTACC TACTACTACG CACGAGCGCA CCCAGTAAAG CCAACACGCC CAGAGCTACA CCGCGCGGTT GCAGAGATTT CTCGCGTACT ACAAACGGAT GCGGTCACAG ACAGATAGCC ATGTGTCTGC GCGCTGAGCT GGGTGTAAGA ATCGCCGACA AGACTGTTCT TAAAATCATG CGTGAGATGG GTGTTCGCTG TAAGATACGA CGTGAGACAG ACTATCACCG CTATAGCTCC TATAAAGGCG TTGTCGGTAA GACCTTTGAA AACGTCATAG GACGCAACTT TTCTACCGAT AGCCCGTGGA AGAAGATGGG CACCGACGTC ACGGAGTTCA AGCAGGCGTG GGGTAAGGCG TACTTTGCAC CCATCTATGA CTTCGGGAGC AAAGAGATTG TCGCATGGAG TACAGCGAAA AATCCAAACA TGGTCCAGCA AATAGCTCTT CTCGACCAAC TTTTGTCAAA GATACCTGAA GGTAGGACTC CAATTCTGCA TAGCGACATG GGCTGGCAGT ATCAGCACAG CACATGGTGC AGACGACTAA AAGATGCAGG AGTTGTCCAG AGCATGTCCA GGAAGGGCAA CTGCATAGAC AACGGTGCTA CCGAGCAGGT CTTTGGCCAT ATGAAAGACG AGTTCTTCCG AGGAAGAACG TGGCCTAACT TTGAGTCTTT CAAGGCAGAT TTGGATGCAT ATGTTATGTA CTGGAACACA CAAAGGCGTC AGGTTAAACT AAAAGGACTG ACCCCGGAGG AGTTCCGGAA TCAGTCCTTG GTGGCCTAG
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Protein sequence | MLSTGVLRTC KGYLLLRTSA PSKANTPRAT PRGCRDFSRT TNGCGHRQIA MCLRAELGVR IADKTVLKIM REMGVRCKIR RETDYHRYSS YKGVVGKTFE NVIGRNFSTD SPWKKMGTDV TEFKQAWGKA YFAPIYDFGS KEIVAWSTAK NPNMVQQIAL LDQLLSKIPE GRTPILHSDM GWQYQHSTWC RRLKDAGVVQ SMSRKGNCID NGATEQVFGH MKDEFFRGRT WPNFESFKAD LDAYVMYWNT QRRQVKLKGL TPEEFRNQSL VA
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