Gene Apar_0405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0405 
Symbol 
ID8413254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp467169 
End bp467987 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content51% 
IMG OID645021973 
ProductIntegrase catalytic region 
Protein accessionYP_003179427 
Protein GI257784210 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0876667 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTATCTA CTGGAGTGCT CAGGACTTGC AAGGGCTACC TACTACTACG CACGAGCGCA 
CCCAGTAAAG CCAACACGCC CAGAGCTACA CCGCGCGGTT GCAGAGATTT CTCGCGTACT
ACAAACGGAT GCGGTCACAG ACAGATAGCC ATGTGTCTGC GCGCTGAGCT GGGTGTAAGA
ATCGCCGACA AGACTGTTCT TAAAATCATG CGTGAGATGG GTGTTCGCTG TAAGATACGA
CGTGAGACAG ACTATCACCG CTATAGCTCC TATAAAGGCG TTGTCGGTAA GACCTTTGAA
AACGTCATAG GACGCAACTT TTCTACCGAT AGCCCGTGGA AGAAGATGGG CACCGACGTC
ACGGAGTTCA AGCAGGCGTG GGGTAAGGCG TACTTTGCAC CCATCTATGA CTTCGGGAGC
AAAGAGATTG TCGCATGGAG TACAGCGAAA AATCCAAACA TGGTCCAGCA AATAGCTCTT
CTCGACCAAC TTTTGTCAAA GATACCTGAA GGTAGGACTC CAATTCTGCA TAGCGACATG
GGCTGGCAGT ATCAGCACAG CACATGGTGC AGACGACTAA AAGATGCAGG AGTTGTCCAG
AGCATGTCCA GGAAGGGCAA CTGCATAGAC AACGGTGCTA CCGAGCAGGT CTTTGGCCAT
ATGAAAGACG AGTTCTTCCG AGGAAGAACG TGGCCTAACT TTGAGTCTTT CAAGGCAGAT
TTGGATGCAT ATGTTATGTA CTGGAACACA CAAAGGCGTC AGGTTAAACT AAAAGGACTG
ACCCCGGAGG AGTTCCGGAA TCAGTCCTTG GTGGCCTAG
 
Protein sequence
MLSTGVLRTC KGYLLLRTSA PSKANTPRAT PRGCRDFSRT TNGCGHRQIA MCLRAELGVR 
IADKTVLKIM REMGVRCKIR RETDYHRYSS YKGVVGKTFE NVIGRNFSTD SPWKKMGTDV
TEFKQAWGKA YFAPIYDFGS KEIVAWSTAK NPNMVQQIAL LDQLLSKIPE GRTPILHSDM
GWQYQHSTWC RRLKDAGVVQ SMSRKGNCID NGATEQVFGH MKDEFFRGRT WPNFESFKAD
LDAYVMYWNT QRRQVKLKGL TPEEFRNQSL VA