| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0404 |
|---|
| Symbol | |
|---|
| ID | 8413253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 466619 |
|---|
| End bp | 467116 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 645021972 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003179426 |
|---|
| Protein GI | 257784209 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00316236 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATGG ATCGTAGGGT AAAGCACGAT ATAGAAGTGA GAAAGAAGGC AGCCGAGCTC
TTTGATGCCG GTATGGGATC TCGTGCAGTT GCAAGTACTC TTTCTGTTCC ACTCCCAACT
GTGAAAGTAT GGCAGCATAT ATACCACGCG TTTGGAAGCG AGGTGCTACT GACCATGGAT
GGCAAGCAGG CTAAATACAC CTACGAGCAA AAAGTTGCAG CAGCAAGAGC TGTCATTGAG
GGCGGCATGA CAAAGACTGA AGCGATGGCC AAGTTTAAGA TTATGTCTCT GGCACCACTT
GAGCGTTGGT GCAGGCTCTA CCGTACAGGT GGTGCAGAGG CTCTTAAGCC AAAGCCAAAA
GGAAGACCTA AAGGCTCTAA GTCCAAGCCG CAAAAGCGCA CCCGCGAGCA GGAACTTGAG
GAGAGGTGCC TAAGGCTCGA GACCGAGGTA GCCTACTTAA AAAAATTGCG CGCCCTGGTC
GAGAAAGGCG AGCTCTGA
|
|---|
| Protein sequence | MRMDRRVKHD IEVRKKAAEL FDAGMGSRAV ASTLSVPLPT VKVWQHIYHA FGSEVLLTMD
GKQAKYTYEQ KVAAARAVIE GGMTKTEAMA KFKIMSLAPL ERWCRLYRTG GAEALKPKPK
GRPKGSKSKP QKRTREQELE ERCLRLETEV AYLKKLRALV EKGEL
|
|---|
| |