| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0382 |
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| Symbol | |
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| ID | 8413231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 443825 |
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| End bp | 446263 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645021950 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003179404 |
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| Protein GI | 257784187 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01073] ATP-dependent DNA helicase PcrA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.264262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATTG ATCTTGAAGG TTTGAATCCT GCCCAGCACC AGGCAGTTAT GACAACTCAA
GGACCACTTT TGGTTCTTGC AGGAGCTGGT TCGGGTAAGA CTCGCGTTTT GACATTTAGA
ATTGCGCATA TGATTGCCGA TGAAGGCGTT CGTCCTTGGC AGGTTCTTGC TATTACGTTT
ACTAACAAGG CTGCAGCAGA GATGCGTGAG CGTCTTGAGG CACTGCTACC TAACAATATT
CGTGGCATGT GGGTCTGTAC GTTCCACGCT ATGTGCGTTC GTCTGCTCAG AGAAGATGGC
GATCGTCTTG GTTATGGTCC CAATTTTGCT ATCTACGATG ATGACGATTC AAAGCGCCTG
GTAAAGGCCA TTTTGTCTGA TTTGGATATT GACGTTCGTC AGTTCCCACT CAATTCTATT
CGTTCTAAGA TTTCTGCTGC TAAAAACGCG CTTTTGTACC CCGATGATGT TGAAGCTCAG
GCGGCAAGTC CTATGGATCA TGTGGTGGCT CGCGTGTATC GTGCGCTCCA GACGCGCTTG
GATAAGGCCA ACGCTATGGA CTTTGATGAC CTTCTCATTA AGGCGTTTGA GCTGCTCTCT
AAGTATCCTG ACGTGCTTGC CAAGTATCAG GAGCGTTTTC GCTACATTAA CGTTGACGAG
TATCAAGATA CTAACGGTGT CCAATACGCA ATTACCAAGC TCTTGGCGTC TAAGTATCGC
AACCTTATGG TTGTTGGCGA TGATGACCAG TCCATCTATT CATGGCGTGG CGCAGATATT
AAAAATATCT TGGCGTTTGA GAAAGACTAT GAGGAAGCAG TTGTTGTTAA GTTGGAGCAA
AACTATCGCT CAACTGGTCA TATTCTAGCT GCTGCTAACG CTGTTGTTGC GCATAATTCT
CACCGTAAGC CAAAGCGCCT TTTCACCGAT GAAGGTGATG GCGAGAAAAT CCAGGTGTAT
CAAGCATCTG ATGAGCGTGA TGAGGGTGCA TGGATTGGTT CTGAGATAGA AAAACTGCAT
GATAAGGGCA TGTCATACGA TAGCATTGCC GTGTTCTATC GTACTAACGC ACAGTCTCGT
ATTCTCGAGG ATATGCTGCT GAGAGCCGGT GTTCCTTATA AGATTGTCGG CGGCACTCGA
TTCTTTGATC GTGCAGAGAT TAGAGACGTT ATGGCATACC TTAAGGTTGT CGTAAACCCT
GATGATGATA TGGCTGCGAT GCGCGTTATT AATACACCTC GTCGTGGTAT TGGTGCAACC
AGCATTCAGA AGATTCAGAC ATACGCACTG CATAATGGCT TGTCGTTTTT CTCGGCATGT
GAAGCATGTG TGATGGAGGA AAGTCTTCTT ACCGCAAAAG TAAGAAATGC ATTGGTAGAG
TTTACGTCTG CTATTGAGCA TGGTCGTCAT ATTGACGGAG AGCTTGACGA GGTTGTTGAG
GCAATCATTG ATCGTTCGGG TCTCATTCGT GCGCTTGAAG CAGAGCATAC CATTGAGGCT
GATGGACGTA TCGAGAACAT TCGAGAGTTC TTTGGTGTTG CGGCAGAGTT TGACGAGTCT
CACGATGATG TTGAAGAGAC GCTTGAGAGT TTACAGCAGC TCAGAGAAGC GGGAGTACTT
GACGCACAGG ATGCTGCTTC ATTGAATGCT ACTGGTTTTA ATGCTGCTAC TGGTACGCTT
TCTAGTGTTG CTGTTTCGCC AACTCCTACT TCTCAGGAAG AGAATCTACA TCCTCAGGTT
GTGGCGGAGA AGCTCCCTGC ATTTATGGAA TGGCTGGCGC TTCGATCAGA CCTGGATAGT
ATGGATGGTT CTACCTCTGC GGTAACGCTC ATGACTATTC ATTCTGCAAA GGGTTTGGAA
TTCCCAGCAG TATTTGTTGC TGGCATGGAA GAAGGTATCT TCCCACACGC AAATTATGAG
GCAGAGGCAG CTCAGCTAGA AGAAGAACGT AGGCTTGCGT ATGTTGCTAT TACGCGTGCG
CGCAAACGTC TTTATTTGAC GTATGCGTCT ACGAGAAGAA CGTATGGTTC TGTTCAGGCA
AATCCAGTAT CGCGTTTTGT CGGAGAAATT CCTCAGGAGC ATGTTAAAGC TATTGGTGTT
GGTTCTGCAG GCTTTTCTGG TGTTGGCTGG GCAAAGCGTG GAGATCGACA TGGTACTTTT
GGCTCTGGGC GTGGTTCAGA GGTCTATGGT GGAAACGTTT TTGGTTCCCG TACGCGCTCT
ACTGGAGGCT CTCAAGCCCC ACGTCCAGCT CCTATTCAGA AAGATCCAGT TCGTGCTTCT
GCAAGTTTTG CTGTGGGAGA TCAGGTCTCT CACAAGACCT TTGGTCCAGG CATTGTTTTA
GCAGTTCAGG GCGATACTAT TGAGGTTAAA TTTACGCGTA CTAATAAGAC AAAGAAGCTT
ATGAAGGGCT TTGCTCCGAT AGTCAAAATT GAGGGATAG
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| Protein sequence | MQIDLEGLNP AQHQAVMTTQ GPLLVLAGAG SGKTRVLTFR IAHMIADEGV RPWQVLAITF
TNKAAAEMRE RLEALLPNNI RGMWVCTFHA MCVRLLREDG DRLGYGPNFA IYDDDDSKRL
VKAILSDLDI DVRQFPLNSI RSKISAAKNA LLYPDDVEAQ AASPMDHVVA RVYRALQTRL
DKANAMDFDD LLIKAFELLS KYPDVLAKYQ ERFRYINVDE YQDTNGVQYA ITKLLASKYR
NLMVVGDDDQ SIYSWRGADI KNILAFEKDY EEAVVVKLEQ NYRSTGHILA AANAVVAHNS
HRKPKRLFTD EGDGEKIQVY QASDERDEGA WIGSEIEKLH DKGMSYDSIA VFYRTNAQSR
ILEDMLLRAG VPYKIVGGTR FFDRAEIRDV MAYLKVVVNP DDDMAAMRVI NTPRRGIGAT
SIQKIQTYAL HNGLSFFSAC EACVMEESLL TAKVRNALVE FTSAIEHGRH IDGELDEVVE
AIIDRSGLIR ALEAEHTIEA DGRIENIREF FGVAAEFDES HDDVEETLES LQQLREAGVL
DAQDAASLNA TGFNAATGTL SSVAVSPTPT SQEENLHPQV VAEKLPAFME WLALRSDLDS
MDGSTSAVTL MTIHSAKGLE FPAVFVAGME EGIFPHANYE AEAAQLEEER RLAYVAITRA
RKRLYLTYAS TRRTYGSVQA NPVSRFVGEI PQEHVKAIGV GSAGFSGVGW AKRGDRHGTF
GSGRGSEVYG GNVFGSRTRS TGGSQAPRPA PIQKDPVRAS ASFAVGDQVS HKTFGPGIVL
AVQGDTIEVK FTRTNKTKKL MKGFAPIVKI EG
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