Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0353 |
Symbol | |
ID | 8413202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 404831 |
End bp | 406717 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 645021921 |
Product | ABC transporter related |
Protein accession | YP_003179375 |
Protein GI | 257784158 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTAATC TGCTCGACAA CTCCCCAGAT ACACACACGT CTGAAAGCGC CGCACAAGTT CAGGACCTCC CTGTAGCTGC AACGCTTTCG GACGTGACCT TTGTGCACGC AAAGGGCGTA GTTGCCTTAG ATCATGTCTC GTTCTCTATT CCCGCGGGTA AACGTACCTG TATTGTTGGT GCAAATGGTT CAGGCAAGTC AACTGTTGCC TCGATTCTCT CTGGCCTTAC CGCTCCCGAT GAAGGAACTG TTACCTTTTT GGGAACAACC GTTGTTAACG ATGGCCAGGT TGACTTTGAG TCGTACAAAA CCATTCGTCC ACAGCTTGGT TTGGTCTTCC AAAATCCTGA GGATCAGATT ATTTGCAGCG TGGTCGCAGA CGATATTGCT TTTGGTCTGG AAAACCTTCA GGTTCCCAGT GGCCACATAA CGCAACTGGT AGAAGAGCAG ATTAAGCTTG GTTCTCTTAC CAAATTTTCG TCTGAAAATC CGCAAAAGCT CTCGGGTGGC CAGCAACAGC GTGTAGCCAT CTCGGGTACG CTGGTCATGA AACCCCAGAT TCTAATTCTT GATGAACCTT CCGCAGCTCT TGACGTTGTT CATAGAAATA ATGTCATGGG TCTTGTCAAG AAACTTCGTG CAGCTGGAAA GACTATCGTT CATATAACGC ATTTCATGGA CGAAGTGGTT TCTGCTGATC ACGTTATTGC CTTGGACGAC GGCCGCATTG CGTTTGAGGG AACACCCGAA GCCCTCTTTG ACCAGCACGA ACTAGTTGAA TGTCTACATC TTGAAGAACC GTTTGCCTAT CAGGTTGCTC ACGCGCTCAA CAACCGCGGA GTTGTCGTGT GCAAATCCCC TTCGGCTGAG CGTGTTCTCA ACGAGCTGAC AGGGCTTCTC GCCACGGCGA CGCAGGGCGG AGATATGGCT GAGAACTGCA ACGGCGCGGC TGCAGGTTGC AACACGAACA ACGGCATCAC TGCGACTGAT AGCGCATCCG AGCCAGCGGC GGTTTCCGTG CGGAACGTGA CGTTCTCGTA CCAGAAACCT GTGCTCAAAA ACATCTCGGT TGACGTGCAA AAAGGCTCGC ATGTTGCTGT TATCGGCTCC ACTGGTTCCG GCAAGTCTAC CCTGGCGCGT TTGATTTGCG CACTTGATAC ACCTGACACC GGCAGCCTTT GCGTAACTGG TTTGGATACT CGACAGAAGC AAAATCGCAG AAAACTCCAC GGCATTGTTG GTTACGTCAT GCAGCGACCA GAACGCCAGC TTTTCGCGCA AACGGTCGCC GAAGACGTTG CGTTTGGCCC CACTAACCTG GGCTTTTCTG CCTGCGATGT AACAAGCGCT GTGAATGCTG CTCTGGAACT TGTCGGACTT TCCCGCAAGG CAGACGCATC CCCTTTTGAG CTTTCTGGTG GTCAGCAAAG ACTTTGCGCA CTTGCGGGCG TTATTGCCAT GCAGCCACAG GTGCTTGTAC TCGATGAGCC TACCAACGGA CTTGATCCCT ACTATCGCTC TAAGCTCAGA AAAATTATTA ACGCTGTTCT TAAGGATGGC TGCACTGTTA TTGAATTGAC ACACTCGATG GAGGATGCGG CAGAAACTGA CCAGATTATC GTGCTCCATG AGGGTGACCT GATTTTTTCT GGCTCACCGC AACAAACATT TACTCATTTC TCAGAGGCAG AATTCCAGAA GCTTGGACTG GGCATTCCTC ATGCACTTGC GTGGGCACAA CGTCTGTCAC GAGCTACGGG AATCAACCTG GGGGAACCTT TGACCCTATC TGAGCTGGCA GATTCGCTGT TGGATGTGGT GATGACCACC CCTGGTGCCG CACAGGTCAG CGACCTCACA CAAGGAGGTC AGAATCATGG CGCTTAA
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Protein sequence | MSNLLDNSPD THTSESAAQV QDLPVAATLS DVTFVHAKGV VALDHVSFSI PAGKRTCIVG ANGSGKSTVA SILSGLTAPD EGTVTFLGTT VVNDGQVDFE SYKTIRPQLG LVFQNPEDQI ICSVVADDIA FGLENLQVPS GHITQLVEEQ IKLGSLTKFS SENPQKLSGG QQQRVAISGT LVMKPQILIL DEPSAALDVV HRNNVMGLVK KLRAAGKTIV HITHFMDEVV SADHVIALDD GRIAFEGTPE ALFDQHELVE CLHLEEPFAY QVAHALNNRG VVVCKSPSAE RVLNELTGLL ATATQGGDMA ENCNGAAAGC NTNNGITATD SASEPAAVSV RNVTFSYQKP VLKNISVDVQ KGSHVAVIGS TGSGKSTLAR LICALDTPDT GSLCVTGLDT RQKQNRRKLH GIVGYVMQRP ERQLFAQTVA EDVAFGPTNL GFSACDVTSA VNAALELVGL SRKADASPFE LSGGQQRLCA LAGVIAMQPQ VLVLDEPTNG LDPYYRSKLR KIINAVLKDG CTVIELTHSM EDAAETDQII VLHEGDLIFS GSPQQTFTHF SEAEFQKLGL GIPHALAWAQ RLSRATGINL GEPLTLSELA DSLLDVVMTT PGAAQVSDLT QGGQNHGA
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