| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0330 |
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| Symbol | araD |
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| ID | 8413178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 378258 |
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| End bp | 378959 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645021897 |
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| Product | L-ribulose-5-phosphate 4-epimerase |
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| Protein accession | YP_003179352 |
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| Protein GI | 257784135 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGCTTA AAGAGCTTCG TGATGAAGTA TATGAAGCAA ATATGGATCT GCCAAAGCAT
GGCCTGGTAG TTTTTACCTG GGGTAATGCT TCTGGACTTG ATCGTGAACG TGGTCTGTTT
GTTATCAAGC CATCGGGTGT TTCTTATGAG GAGCTCAGCC CGGAGAACTT GGTTGTCTGT
GATCTTGATG GCAATGTTGT TGAGGGTGAG TTGAACCCAT CTTCCGATAC TCCAACTCAT
GCTTGTTTGT ATCGTGCATG GGGCGATAAG ATCGGCGGAA TTGTTCACAC TCACTCAACC
CACGCTGTTT CTTGGGCACA GGCTGGACGC TCTATTCCTT GCTATGGCAC CACACACGCA
GATTATTTCT ATGGAGATAT TCCTTGCGTG CGCAGCCTAA CTAAGGGCGA GGTAGAGAGT
GCATATGAGC TTGAGACCGG AAACGTTATT GTTGAGGGCT TTGCTAACTT GGATCCAATT
GCGGTTCCTG GAACGCTCCT TCACAACCAC GGTCCTTTCT CTTGGGGTAA AGATGCCATG
GCTGCTGTGT ACCACGCTGT AGTCATCGAG GAGGTTGCTA AGATGGCAAC ACTCACCGAG
CTCAATAACC CTAAAGTTCA GGAGGCACCA CAGTACCTTC AGGACAAGCA CTACATGCGC
AAGCATGGTC CAAATGCCTA CTACGGACAG GGTAATCATT AA
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| Protein sequence | MMLKELRDEV YEANMDLPKH GLVVFTWGNA SGLDRERGLF VIKPSGVSYE ELSPENLVVC
DLDGNVVEGE LNPSSDTPTH ACLYRAWGDK IGGIVHTHST HAVSWAQAGR SIPCYGTTHA
DYFYGDIPCV RSLTKGEVES AYELETGNVI VEGFANLDPI AVPGTLLHNH GPFSWGKDAM
AAVYHAVVIE EVAKMATLTE LNNPKVQEAP QYLQDKHYMR KHGPNAYYGQ GNH
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