| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0324 |
|---|
| Symbol | |
|---|
| ID | 8413172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 371955 |
|---|
| End bp | 372719 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645021891 |
|---|
| Product | transcriptional regulator, DeoR family |
|---|
| Protein accession | YP_003179346 |
|---|
| Protein GI | 257784129 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.479336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAA GTCGTTCATT TGTAACATCA CGCAGAAGTT CTATCATGAG TCTTCTTGAA
CAATACCGCC AAGTTTCCGT AAGCGATCTT GCTGATAGGT TCGAAGTTTC TTCACTTACT
ATCCGTCGCG ATCTTGATGA ACTTGAAGCT CAAGGTCTCA TTTCTCGAAG CTATGGCATG
GCTACGTTGC TTGACCCACT CTCTACGGGC CTCAGTTCTA ACCAAGTGAC CGCAAAGTTC
AAGCTTGCCC AAGCTGCGGC AAAACTAATT AAAGATGGCG ATACGGTCTT CATTAATACC
AGCTCAACTG CCATTAAAGT TCTGGAATTT ATTACTGCTG AGAACATCAC AATTGTTACC
AATAACGGGA GCGTCCTGGC AGCTGACTAT CCCCCATCAA TGACCGTTTT AGTTACAGGT
GGAGAAGTTC GACCAGCTAA GAAGTCTATG ACCGGCGATT TTGCGCTTGC TTCAATCAAC
CAGATTCGCG CCGCAAAGTG TATTTTGGGT TGCTCGGGAA TTTCTGCTGA ACGTGGTCTT
ACCACACTGG TTTCAAACGA GATGCGTGTA AACTCGCTCA TGCTTAAGCA CTCTGAACAG
CACATCGTTT TAGCCGATTC CAGTAAGCTG GGTGTTAACT CCAGCTTCCA ATATGGATCT
CCTTCCGATA TCGACGTGCT TATGACAGAC GATTCTGCGT CAATCTCGCA GGTAACGGCT
CTTGAAGCTG CCGGTGTTCG CAAGGTTGTC CGCGTGAGCC TGTAG
|
|---|
| Protein sequence | MATSRSFVTS RRSSIMSLLE QYRQVSVSDL ADRFEVSSLT IRRDLDELEA QGLISRSYGM
ATLLDPLSTG LSSNQVTAKF KLAQAAAKLI KDGDTVFINT SSTAIKVLEF ITAENITIVT
NNGSVLAADY PPSMTVLVTG GEVRPAKKSM TGDFALASIN QIRAAKCILG CSGISAERGL
TTLVSNEMRV NSLMLKHSEQ HIVLADSSKL GVNSSFQYGS PSDIDVLMTD DSASISQVTA
LEAAGVRKVV RVSL
|
|---|
| |