| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0321 |
|---|
| Symbol | |
|---|
| ID | 8413169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 367770 |
|---|
| End bp | 369275 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645021888 |
|---|
| Product | PTS system, fructose subfamily, IIC subunit |
|---|
| Protein accession | YP_003179343 |
|---|
| Protein GI | 257784126 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component |
|---|
| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0357184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGACG AGTCAAAGTA TGACATCGTT GCTGCTACTG GTTGTCCAAC CGGTATCGCG
CACACCTTTA TGGCTAAGGA GGCCCTTGAG AAGGCCGCCG CAGCTAAAGG TCTTACCATT
AAGGTTGAGA CGCACGGTCA GGTCGGTGTA GAGAACGAGC TTACCGCAGC TGAGATTAGG
AACGCCAAGG CAGTAGTTGT TGCTGCCGAT AAGGACGTTC AGGCTGAGCG TTTTGCCGGA
AAACCAATGG TAAATGTTGG CGTTACAGCA GCTATTAAGG ATGCGGAAGG TCTCATTGAC
CGTGCACTTG TTGCTCAGCC TGAGGGTGAG CTTGCAGAAG CAGACGATGC CCCAGTCTCA
AGTACCATTG AGAAAGAGTC TGTAGGCCAC ACTATCTACA AGCACCTTAT GAATGGCGTT
AGCCACATGC TGGTCTTTGT TGTTGCTGGT GGTGTTTTGA CCGCAGTTTC ATTCCTCTGG
GGCATCACTT CCTTCAGCTC CACTGAAGCT GACTACAACA GCTTTGCTGC CATGCTCAAG
ATTATTGGTG GCATTGCAAT GGGCCTTATG GTTCCAGTCC TTTCTGCTTA CATTGCTGAG
TCTATTGGCA AGCGTCCTGC CCTGGTTCCT GGTTTTGTTG CAGGTATGAT TGCTATCCAA
GGTCTTCCAA TCAACCCTAA TACCGGCATG ATTGATGCTG TTGGCGCTGG TGTTGGCTTT
GGCTTCCTGG GCGGCATCGT CGGCGGCTTC CTTGCTGGTT ATGTTATCGT TGGTCTTGAG
AAGCTTCTTT CTGGTCTTCC AAAGAACCTT GATGGCTTGA AGGCAATTTT CCTGTATCCT
CTGCTTTCTA CCACCATTGT TGGCCTGGTT ATGCTGGGCA TTTCTGGTCC TATGGCAGCA
ATCAACACTG GCATGATGAA CTTCCTGCGC GGTCTGTCTG CTTCTGGCCC AATTGTCCTC
GGCCTTGCAA TTGGTTGCAT GTGCGCATTT GATATGGGTG GTCCAGTCAA CAAGGCAGCT
TACGTTACCG GTACAGCACT TCTGACTGAG GCTCTCAATG CTGGCATTGG TACTCCAACC
TATGAGTTTG GTACCAACTT TATGGCTGCA GTTTCCGCTG CGTGTATTGT TCCTCCACTG
ATTACAACCT TTGCTGTTGT CGTTGGTAAG AAGTACTTTA CTAAGCCCGA TTTCAACGCT
GGTTTGGTCA ACTTCATTCT TGGCTGCACC CACATTACCG AGGGCGCAAT TCCATTCATG
ACCAAGAACA TTTGGCCTGT TATGCCTATT ATGATGATCG GTTCTTCCAT CGGCTCCATT
TTGACCCTGC TCTTTGGTGT TCACGATCCA GCACCTCACG GTGGTTTCTT GGTTCTTCCA
GTTGTTGATG GCGGCCTTAA GTGGGTTCTC GCTATTCTTA TTGGTGCTGT TGTTGGTGGC
ATTCTCTTTG TTGCTTTCAA AGCATACGAG TACCGCAAGA ACGGCGACAA GATTGTCGAG
GACTAA
|
|---|
| Protein sequence | MADESKYDIV AATGCPTGIA HTFMAKEALE KAAAAKGLTI KVETHGQVGV ENELTAAEIR
NAKAVVVAAD KDVQAERFAG KPMVNVGVTA AIKDAEGLID RALVAQPEGE LAEADDAPVS
STIEKESVGH TIYKHLMNGV SHMLVFVVAG GVLTAVSFLW GITSFSSTEA DYNSFAAMLK
IIGGIAMGLM VPVLSAYIAE SIGKRPALVP GFVAGMIAIQ GLPINPNTGM IDAVGAGVGF
GFLGGIVGGF LAGYVIVGLE KLLSGLPKNL DGLKAIFLYP LLSTTIVGLV MLGISGPMAA
INTGMMNFLR GLSASGPIVL GLAIGCMCAF DMGGPVNKAA YVTGTALLTE ALNAGIGTPT
YEFGTNFMAA VSAACIVPPL ITTFAVVVGK KYFTKPDFNA GLVNFILGCT HITEGAIPFM
TKNIWPVMPI MMIGSSIGSI LTLLFGVHDP APHGGFLVLP VVDGGLKWVL AILIGAVVGG
ILFVAFKAYE YRKNGDKIVE D
|
|---|
| |