Gene Apar_0314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0314 
Symbol 
ID8413162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand+ 
Start bp359642 
End bp360652 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content42% 
IMG OID645021881 
Productmannose-6-phosphate isomerase, class I 
Protein accessionYP_003179336 
Protein GI257784119 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1482] Phosphomannose isomerase 
TIGRFAM ID[TIGR00218] mannose-6-phosphate isomerase, class I 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.000000281347 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.468377 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGATT TAGACAAGAA TACAGACAGC TTATATAACG ACCTTATTTT TTTAAAACCC 
CTTTTTCACA ATAAGATTTG GGGCGGAAGA AGGCTTGCTG AAGAGTATGG CTATGACATT 
CCTGAGGGTT CAGTAGGCGA GTGCTGGGCA ATTAGCGCGC ATCCTAATGG AGACTGTGAA 
GTTGCATCTG GTGCATATGC TGGAAAGACC CTTTCTAAGC TTTGGGAAAC TCATCGTGAG 
CTTTTTGGTA ATGCAGAAGG AGACCGTTTT CCACTTCTCA TTAAAATTCT TGATGCAAAA 
GATGACCTTT CTGTTCAGGT ACATCCAGAT GATGAATATG CTGCAGAGCA TGAGAATGGC 
TCGCTAGGTA AGTCTGAATG CTGGTACATT TTGGAGGCAA AACAGAATGG CGATATTGTT 
GTTGGCCAAA ATGCTTCATC AAAAGAAGAG TTTGCTGAGC TAGTTAAACA GGGTAAGTGG 
AGTCAGCTGC TAAATTACGT GCCAATCAAG CCTGGAGATT TCTTTAGGAT TGATCCTGGT 
ACGGTACATG CCATCAGAAC AGGTACGTTG ATTCTTGAAA CGCAGCAAAG TTCAGATATT 
ACGTATCGTG TGTATGACTA TGATCGTTTA GGTGATGATG GTAAGCCTCG TGATTTGCAT 
TTGGCACAGA GTCTTGAGGT TATTGATTAC GCACAGGAAG CCCCGACATC CGGAGCAATT 
ACTGCTCCAG AAATTGATGG CAAAACTGAG CTTATGAGCT GTAAGTATTT CTCGGTAGAA 
AAATATGAGA TTCAAAAGAT AAAAACTATT GCTCAGCCTT GGCCGTTTAT GTGCGTAAGC 
GTTATTGAGG GAGAAGGAAC AGTTTGTGCT GATGGTGGTA AGGGATGTGA GCATAAGCTT 
TATAAAGGCT CGCATTTTAT TGCTCCTGCA CTTTCTGGTG ACCTTCATTT TGTAGGTACC 
ATGACTTTGA TTGTGTCTCA TCTTCCTCAA CCAAGGAGCA CAGCTCTTTG A
 
Protein sequence
MLDLDKNTDS LYNDLIFLKP LFHNKIWGGR RLAEEYGYDI PEGSVGECWA ISAHPNGDCE 
VASGAYAGKT LSKLWETHRE LFGNAEGDRF PLLIKILDAK DDLSVQVHPD DEYAAEHENG 
SLGKSECWYI LEAKQNGDIV VGQNASSKEE FAELVKQGKW SQLLNYVPIK PGDFFRIDPG 
TVHAIRTGTL ILETQQSSDI TYRVYDYDRL GDDGKPRDLH LAQSLEVIDY AQEAPTSGAI 
TAPEIDGKTE LMSCKYFSVE KYEIQKIKTI AQPWPFMCVS VIEGEGTVCA DGGKGCEHKL 
YKGSHFIAPA LSGDLHFVGT MTLIVSHLPQ PRSTAL