Gene Apar_0281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0281 
Symbol 
ID8413129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp321959 
End bp322711 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content50% 
IMG OID645021848 
ProductABC transporter related 
Protein accessionYP_003179303 
Protein GI257784086 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1121] ABC-type Mn/Zn transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00633179 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTTT GCGTTTCACA ACTTTGCGCC TGGTACGAGA AAAAAGACCG CGAGAAACCC 
ATCATTCATG ACGTGAATTT CTCCCTCTCA ACAGGAGATC TATGCGCACT TGTAGGCGTC
AACGGTGCCG GTAAGTCTAC GCTCTTCAAA GCGCTGATGG ATACCATCGC ATGCGAGGGC
TCCATCACCT GGGGCAATCA GACTCTTTCA CAAGCACGTA AGCTGGGCAA AGTCAGCTAC
GTTCCTCAAA CGGAAGCAAT TGATGCGACC TTTCCCCTGC TCGTAAAAGA CGTTGTCATG
CAGGGTAGAT ATGTTCATCA AGGTTGGATG CGCATAGCTT CCGCCCAGGA CAAGGAGCTG
GTTGCTCAAG CACTAGAACG CGTTAACCTG GCCGACCTTA TGAATTGTCC GCTTGCCCAG
CTTTCTGGTG GACAAAGAAA GCGCGTGTTT GTGGCACGCG GAATCGCACA AGCCGCTGAA
CTGGTGTTTC TCGATGAACC GTTTGCAGGA GTAGACGCTC GTTCTGAAGC CATCATCACT
GAACAGCTCA ATAATCTCAG TAAAGAAGGC AAAACATTGC TCGTTTCAAT TCACGACATT
AACTTAGCTC AGCAAAAATT CCCGCTTTGC CTGGTCATCA ACAGGACTAT CACCGCGCAG
GGACCTTCAA AAGAAATTCT TTCCGGAGAC GCGCTCCTAC AGAACCTCGG AATTTCTGAG
GACACCCATA TTGAGGAGGT ACTCCATGCC TGA
 
Protein sequence
MNLCVSQLCA WYEKKDREKP IIHDVNFSLS TGDLCALVGV NGAGKSTLFK ALMDTIACEG 
SITWGNQTLS QARKLGKVSY VPQTEAIDAT FPLLVKDVVM QGRYVHQGWM RIASAQDKEL
VAQALERVNL ADLMNCPLAQ LSGGQRKRVF VARGIAQAAE LVFLDEPFAG VDARSEAIIT
EQLNNLSKEG KTLLVSIHDI NLAQQKFPLC LVINRTITAQ GPSKEILSGD ALLQNLGISE
DTHIEEVLHA