| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0273 |
|---|
| Symbol | |
|---|
| ID | 8413121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 316016 |
|---|
| End bp | 317716 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645021840 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003179295 |
|---|
| Protein GI | 257784078 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGACAG AAGTTAAAAA TAACGCCACA ACTGCACGTA CTTCTCGCCG TGGTGCATTT
ACTGTCATGT TGAGGTTGGT AGGACTGGTA CGCCCTCTGG CCGGCTATAT GATACTTGCA
ATTTTGATGG GCGTTTTAGG TAACCTTGCT GCTACGTTCA TTAGCATTTT TGGAGCGTAT
GCCCTGCTCA GTGCTACGGG CTTTGCTTCA TCATCTCCTA TGGTGTTGCT TTTTGGTGGC
ATGCTTCTGT TTGCATTGGT TCGTGGTTTG CTACGCTATG CCGAGCAGGA GTGCAACCAC
TTTATTGCGT TTAAACTGCT TGCGCTTATT CGAGACCGCG TGTTTACGGC GTTAAGAAAG
CTTGCACCAG CAAAACTTGA GGTTAAAAAT AAAGGTAACC TGATGAGTGT TATCACCTCA
GACATTGAGC TGCTCGAGGT TTTCTATGCG CATACTATCT CACCCATTTG TATTGCGACT
GTTTTCTGCA TTGTTATGGT GTGGTTTATT GCGGGTAGCA CCAACTGGAT TTTAGGTGTT
ATTGCACTTG TTTCTTATCT GATTGTTGGT GTAGTTATCC CGTTTAACAT GTCTAAGCGC
TCCGAACAAG ACTCTGCTGA AGCAAGAGAT CTTGCTGGCA AGCTTTCGAC GGTTACCCTT
GATAACCTGC GCGGCCTTGA CGAGATTCTG CAATATAACA CTGGTAAGCA GATGATTGAG
CAAACAAGTC AACTAGCCAA TCAGTTAAGT GACAGACAGC AGGCAGTTAA GAAAGCATTT
GGTGTCAACG ATGCCGTTAC CTCAACGGTC ATTTTGCTTG CTGGTCTTGT CATGTTCTTT
AGCTCGTTCT ACTTGGCTCA TACCCAGCAG ATTCTTATGA ACGAAGCTTT TATTGTTACT
ATTGCATTGA TGAGTTCATT TGGTCCTGTT GTTGCTTTAG CCTCACTTGG TACAACGCTT
ACCAGTACTT TTGCTGCCGG TAATCGCGTT TTGGATATTC TGGACGAGAA GCCTCTGGTT
GAAGATGTAG TAGACCAAAA AGATGTCTCT TATGAGGGCG TCCGTGTTTC TGAGCTTTCA
TTTGCGTATG ATGATGAGCA GATTCTGGAT AATATTTCTG TAGACATTCC TACCGATAAA
ATTGTAGGAA TTGTAGGTAA GAGCGGCTCG GGTAAGTCTA CGCTGCTTAA ACTTTTGATG
CGTTTCTGGC CAGCAACACC TGGTGCCATT GAGATTTCTG GAACTCCTTT AGAGCAGATT
AATACCTCTA ACCTGCGTGA TCTTGAGAGT TATATGACAC AGGATACGCA TCTGTACCAT
GATTCCATCA AGAATAATCT GCGCATTGCA AAGCTTGATG CAACAGATGA GGAGATTATT
GAGGCATGCA AGAAGGCTTC AATTCACGAG TGCATCTCTA CGTTACCTCA GGGCTATGAC
ACGCCTGTTG CAGAACTTGG CGACTCGCTT TCTGGCGGAG AGCGCCAGCG TATTGGTCTT
GCTCGTGCTT TCTTGCACGA TGCACCTTTG ATGCTGCTTG ATGAGCCAAC CAGTAATCTA
GACAGTTTAA ATGAGGCTAT TATTTTGCGT TCTCTTGATA AAGAGACTGA GCACAAATCC
GTGGTTCTTG TTTCTCACAG AGCTTCTACC ATGGGAATTG CAGATGTTGT TTACACCGTT
GATGGGGGAC GAGTGAGCTA A
|
|---|
| Protein sequence | MKTEVKNNAT TARTSRRGAF TVMLRLVGLV RPLAGYMILA ILMGVLGNLA ATFISIFGAY
ALLSATGFAS SSPMVLLFGG MLLFALVRGL LRYAEQECNH FIAFKLLALI RDRVFTALRK
LAPAKLEVKN KGNLMSVITS DIELLEVFYA HTISPICIAT VFCIVMVWFI AGSTNWILGV
IALVSYLIVG VVIPFNMSKR SEQDSAEARD LAGKLSTVTL DNLRGLDEIL QYNTGKQMIE
QTSQLANQLS DRQQAVKKAF GVNDAVTSTV ILLAGLVMFF SSFYLAHTQQ ILMNEAFIVT
IALMSSFGPV VALASLGTTL TSTFAAGNRV LDILDEKPLV EDVVDQKDVS YEGVRVSELS
FAYDDEQILD NISVDIPTDK IVGIVGKSGS GKSTLLKLLM RFWPATPGAI EISGTPLEQI
NTSNLRDLES YMTQDTHLYH DSIKNNLRIA KLDATDEEII EACKKASIHE CISTLPQGYD
TPVAELGDSL SGGERQRIGL ARAFLHDAPL MLLDEPTSNL DSLNEAIILR SLDKETEHKS
VVLVSHRAST MGIADVVYTV DGGRVS
|
|---|
| |