| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0272 |
|---|
| Symbol | |
|---|
| ID | 8413120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 314280 |
|---|
| End bp | 316016 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 645021839 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003179294 |
|---|
| Protein GI | 257784077 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.933843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATCA ACAAACGCCT CATTGCCCTC ATTGAGGAGA GTAAAAAATA TATTGGCTTA
ACTGTGCTGT ATCAGTGGAT TGCGCTGATT GCCAATATTG TATTTATGTA TTCTCTGGCA
AGAATGATAG AAGCTTTGTT CATGGATTAT TTTGTCTTTG AAGAGCAGCT GTTATTTATT
GTGTTATGCC TCATTGCTAT TGTGATTAGG TATTTCTGTA AACTCGCTCA ACACAAAACA
AGTTTTTATG CAGCAAAAAG AGTTAAAAAG ACCCTTCGCG AGAAAATCTA TCAGAAACTC
TTAGAGTTTG GTCCTTCGTA TAAAAACTCA TATGCTACCA GCGAGATTGT TCAACTTGCT
GTTGAAGGCG TTGATCAGCT TGAAACGTAT TTTGCACAGT ATTTACCACA GTTCTTCTAT
GCTGTTTTAG CTCCACTCAC ACTTTTTCTT GTTTTGCTTT TTATTAGTCC TGTAGTTGGT
ATTGTTTTGC TGGTATTTGT TCCACTTATT CCAATGACCA TTGTTTTTAT CCAGAGGTTT
GCGAAGAAGC TTCTGTCTAA GTATTGGGGT CAGTATACGC AGCTCGGCGA TACATTTTTG
GAGAACTTAC AAGGTCTGAC TACGGCAAAG ATTTACAAGG CTGATGACTT TAAGCACAAG
CAGATGAACG AGGAAGCCGA GCACTTCAGA CGTATTACCA TGAAGGTCCT GACCATGCAG
CTAAACTCTA TTACTGTGAT GGATGTGGTT GCATTTGGTG GAAGTGCTCT TGGTACAATC
CTTGCAATTC AGCAGGTGAA CGACCAGCTT CTCTTTATGT GGGAGGGCGT CTTTGTTATT
TTGATTTCGG CTGAGTTCTT TTTGCCTATG CGTCTTTTGG GCAGCTATTT CCATATTGCC
ATGAATGGTA TGGCAGCATC GGATAAGATC TTTAACTTAC TTGATATGCC CGTTCAAGAG
CAAGGTGCCA AAACTTTTCC AGCTTCCAGT GATGTATCGT TACGCAATGT TTCTTTTTCC
TATGATGGCG AGAAACCCGT TTTGGTGAAT GTATCTTTTG GAATGCATGC TAACTCTTTA
AATGCACTGG TAGGAGAGTC AGGCTGTGGC AAATCAACAA TCGCAGCACT TTTGACTGGA
AAGCTTCGTT CGTATTCTGG TGATGTTTTG TTTGGAAATA CCAGTTTGGC AGACATTTCC
GATCAGAATT TACTTCAAAA CGTTACGTAT ATTGGACATC AAGCGCATCT CTTTATGGGA
AGTGTTCGTT CCAACCTTGT CATGGGTAAC CCCGAAGCAA CTGAAGACCA ACTTTGGCAT
GCTCTTGAGC AGGTCAATCT TGCTGAGTTT ATAAGGTCTC TAGGTGGACT TGATGCTCCC
GTTGCTGAGA AGGGCTCTAA CTTGTCTGGT GGTCAGCGTC AGAGGCTGGC ACTTGCTAGA
GCGCTGCTTC ATAACAGCCA GATGTACATC TTTGACGAAG CAACTTCAAA CATTGACGTT
GAGAGTGAGG ATGTCATCAT GCAACAGGTT CACCAGCTTG CTCAGTCAAA GATGGTGCTG
GTGATTTCGC ATCGTTTGGT GAACGTCAAA AACGCTAATC AGATTGTGGT CATGCAACAT
GGTCGCGTTG TTGGAAGTGG TACTCATCAA GAGCTGCTTG CAACAAATGA CGAGTACAAG
CGAATGACAC AGGCCCAGAC CGAGCTTGAG AATTATGTGA AAGGAGTTGA GGCGTAG
|
|---|
| Protein sequence | MMINKRLIAL IEESKKYIGL TVLYQWIALI ANIVFMYSLA RMIEALFMDY FVFEEQLLFI
VLCLIAIVIR YFCKLAQHKT SFYAAKRVKK TLREKIYQKL LEFGPSYKNS YATSEIVQLA
VEGVDQLETY FAQYLPQFFY AVLAPLTLFL VLLFISPVVG IVLLVFVPLI PMTIVFIQRF
AKKLLSKYWG QYTQLGDTFL ENLQGLTTAK IYKADDFKHK QMNEEAEHFR RITMKVLTMQ
LNSITVMDVV AFGGSALGTI LAIQQVNDQL LFMWEGVFVI LISAEFFLPM RLLGSYFHIA
MNGMAASDKI FNLLDMPVQE QGAKTFPASS DVSLRNVSFS YDGEKPVLVN VSFGMHANSL
NALVGESGCG KSTIAALLTG KLRSYSGDVL FGNTSLADIS DQNLLQNVTY IGHQAHLFMG
SVRSNLVMGN PEATEDQLWH ALEQVNLAEF IRSLGGLDAP VAEKGSNLSG GQRQRLALAR
ALLHNSQMYI FDEATSNIDV ESEDVIMQQV HQLAQSKMVL VISHRLVNVK NANQIVVMQH
GRVVGSGTHQ ELLATNDEYK RMTQAQTELE NYVKGVEA
|
|---|
| |