Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0266 |
Symbol | |
ID | 8413114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 305471 |
End bp | 309523 |
Gene Length | 4053 bp |
Protein Length | 1350 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645021833 |
Product | cell wall/surface repeat protein |
Protein accession | YP_003179288 |
Protein GI | 257784071 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02543] Listeria/Bacterioides repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.808645 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAGAA AAAATAAGAA CTTTGCAGGT AAAGGTGCTA AGACAGCTAT GTCTTTGGTA CTCGCACTCT CTTTAGTTCC TTCTTCAGCA TTAGCAGAAA TTGCTAACAC TCAAGAAACA ACTCAAGCGC AAGAAGTTGC GGCAACCCAA ACAAGTGATA CAACAGCTTC AACTTCTGAA GCAACAGCAG AAACAACAGC TGAATCTACC GTTAACACCG AAGCTACTAC TAACCAGCAG ACTTCCACTA ACCAGCAAAC TTCCGAGCAG ACTACTACTC CTACAGATAG ATCTTCTCGC CGTGTTGCAA GAAGCCTTTC AGTTACCTCA ACTGAGCTCT GGGTAGACGG AACCAATGGT AACGACGCCA ATGATGGCTC TAATACAAAT GCTCTCAAAA CTCTACAGAA AGCACTGGAG CTATGTTCAG AAACTCCATC CATCAATACC ATTCATCTTA AAGGCAATCT TGATTTGACC TCTACGGTTA CTATTCCTGC TGGTCTCACA CTCAAAATTG CTGATGAAGG TGCAACTCTT ACTGGCACTG GTAACAGAAT TGATGGTCTT GTTCTGAAGT CTGGTTCAAC GCTAACCGGC ACTGGTACCC TTACTATGTC TGGCTTCAAA ACTGCCCTAA CTGCACAGCC TGGTTCAACT ATCACCGACG GTACCTACGT CTTTAAAAAC AACGCAGGTT CTAGTGGCTC TCGCGGTATT TCTCTTGGCG GAACCGTTAA AGGCACTACC AACAAAAACA GCGTTAGCAT CACTGCAGAC GATAAGAGCA ATACAAACTT CTTTGAGTCC GGCTCTACTT TTGAAAACGC TACTATCAAC GTCACTTCAC AGGCACGTAC CTGGAATGAT GCTCGTAATC TTACCCTCAA GAACACTGAT CTTAAGGTTA AGGGCTTTGG TCAGACTTTC TATGTCAACC AGCTCAACAT GACTGATTCT ACCCTGACCA TTAACCCATC TTACTGGGGA CAGACGGGTA TGACCATCCA GGGTCCTTCC AATATTGTTA ACTCCACCAT CAATGCAAAT GCTGGTTCTA CTTCTGGCAT TTCTGTTGGT GTAGCTGGAG GAACTGTAAA CGTTACTAAC TCAACCCTTA ACTTTACCAA TGGTGGAACT GGTGGTCTGA ACGTCAACAC TGGTAATGTC ATCATTAACA ACTCAACCAT TAAAGGAGAT GGTCGTAATT CTGGCGCTCT CTTTGGTGCA CAGACTAATG GCTCCATCCA GTTCACTGGA AACAGCCTAG TAGAGACCCC TGCGACCAAG AACTCTGATA ACGGTGCTGG CCAGACTCGT CAAAATTACA ATGTTGTTGG CGGTTCGTAT CTGCTCAAAT ATGCACCTGA CTACAACAGC GGCTTTGGTA GCACTATTCC TACAAACGGT GCAGCTAACG GAAACGAAGC ACTCTCGCTT TTTACACTTG CTGACGTATC AACTAACTCT CTAAGCCTCA TTAATGCTAA TGGTGCAACA TACACCTACC CAGTTGCTAA CGCATCAAGT GATGGTCAGA AGCACGTCTG GGCACCTGCT GCAACTGTCA CCTTTGATCT TAACGCCCCA GGCGTTACGG GCATTAATCC AACATTTGCT GATGGCACTA CCGCTAACAA AACAGCTCTT GCCATGCGTG GCAACTCTCT TGCAACCGCT TCTTCTGTAG CAGAAGGCTC CACTACCCTG CCTGCAGACC CCTATGCAAG CGGCCAGGAG TTTGACGGCT GGTACTACAC TGACGCTTCT GGCACAGAAC ATCAATTTAC CGCTGATACT CAGGTCACCT CTGACATGAC AGTCTATCCA CACTGGAAAG CTAACACCTC TTGGCTCTAC GTCAGGTATC ACAATGGTAA CGGCGTCTCT GTCATTGACC GCGTTGCTAC TAACGCAAAC CGTACCGTAA CAGTTCGCTC TAATACTGAG GTCAACAACC TCAACAATAA CTTCAATATT GCTGGTAAGA CCTTCAAGCG CTGGACTACC CAGGCAAACG GCGCTGGCGA TGAGGTTGCA GCTAACTCCA ACCTAGCTAT TCCTACTGGT ACCGATACCA TTGATTTGTA TGCAGACTGG GAGGAGCAGC GCCTTACCGT GTCCTTCTCG GCAAATGGTG GAACCTTCTC TGCAAATAGC GTATTTAAGC AGAACCCAAA CGTCTTTGAC ATCACTACCG ATGCAAACGG TGGAGAGGTT GCTACTATCA AAACTCATCC AACCGTTGCT GAGCAGACTA ACATCAACGC ACTGCTTAGA AACCTCAGTG GCAATACCCT AAGCGCTACA ACTGCTGGAA TTGCAAGTCC AACCGACTCT AACACCAATA CTGCATACAC AAATATTGCA ACTCTTGAAA ACCATATCCT AGACAGCGAG GATAAACCAA AGACCTTCTT TGGTTTTGTT GTTGGCCACG ACTATCACTA CTGGTTTACT GACGCTGCAG GCAACTCCCC TGCAACTATC AACGGTGGTG CAACGCTTAC TAACGACGTC ACTTACTACC TCAAGTGGAA AGATGATCCT TCCATCCAGA AAGTTGAGCT TACCAGTGAT CTTCCTGCTG ATATGTGGAG CGATTCTCAG AACAACACCA CTCAGATTAA AGAAGTTTCT AACGATAAGA GCTTCAGTCT TACGGGCGCC ATTGATGCTA CTTCCGTCAT TAACCAAATG ACTAACTTTG AGAATAACAT CGCTGGTGGC CTTGACGACC TAACCAAGAT TACGCTTTCA GGCACAACTT CTACCTTTAC TGCAAAACTT ACTCTTCCTG CTGGCGTTGT TGTCCCAGCT AATCCAACAG TAACCACCTC TGGTCTTGGT GACCTCTTTG ATGTTTCAAA TGTCTCCGTT AACGGCCAAG AAGTTACCGT TACCCTGAAG CTTAAGAATA CTTACAGCAA CTATAAGCAG CTCAAAGATG CTGTTGAAAC AGTCGGCAAA GACGACGCAG CTACCGCAGA GATCGCAAGA CCCCTTACCG TAACCGTTAA CGGCCTCACC CTTGACTCAA CTCAGGTTAC CAATGGTCAG GAGCTTACCG CTACAGGTAC TCTTACTGGT ACTTTTGAGT CTTATGCAAA GAATACCGTC ACTAACGTTA CCAAGAAGTA CAACCTTTCT TGGAACGGTG TTCAGATTAC TGCAAACAGA GATCCTCGTG GTACAGATAT TCAGCAGACT CTGATTGTTA ACAACCCTAT TGATATGAAC ATCCCTGCAG ATATGCTCGC AGACGAGAAT ACCGAGCATG ACCAGGTCAT CACCATGAAG GCAGGCTCTA CCTTTAATCT CACTGGTTCA ATTCTTGCTT CCTCTATCCA AGAGCAGATG AACAACATCG AGCGTGCCTA TCCTAATACC AACCACGACA CCATTACGCT GAGCAATCTT AAGTTCAAGT TCACAGCAAC TCTGACCGTT CCTGAAGGAA TGACACTCCC AAGCAACCTT GATGCCAGCA CTGTCCAGGC TTCTAACTTT GGTAGTGGCT TTAAGGTCAG CGATGTCCAG GTTAACGGCC GTACCGTTAC TGTCACGTTT GAGCTCAGCG ATCCATCTTC CATTAGAACG TACTCTGACC TTGAACGTAT TGTCGACGAA GCCAGTGCAA ACGGTGGTTG GATGAAGCTC ACCATTCCTG GTGTCACCAT TGACTCCAAT GTTGCTGCAG GTACTCAGCT CACCGCTGTT GGTACAGTTA CAGGCTCCTT TAGCGCTATT GCTGATTCCG CAGCCGGCAA CCGCAAAGCC TTCTCGTTCA CTTGGAATGG TGTTCAATGG CCAGATGGTA AAGACGCTGT TGCAACTAAT AACGACACCA TCCAGTTAAC TATTACTGTT GCAGAGGATA AGACCCCAGA GACACCTTCT CCTTCCACTC CAACTAAGAA GAAGCCATCT AAGAAAAAGA AGACTCCATA TACAGGAGAC GCTTCTGTTG CAGCACCTCT TGGTGTACTT CTCGCAGGTA TGACAACTGT AATGACTTCA CTTGGCATTA CTAAGCGTCG TAAAAATAAG TAA
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Protein sequence | MERKNKNFAG KGAKTAMSLV LALSLVPSSA LAEIANTQET TQAQEVAATQ TSDTTASTSE ATAETTAEST VNTEATTNQQ TSTNQQTSEQ TTTPTDRSSR RVARSLSVTS TELWVDGTNG NDANDGSNTN ALKTLQKALE LCSETPSINT IHLKGNLDLT STVTIPAGLT LKIADEGATL TGTGNRIDGL VLKSGSTLTG TGTLTMSGFK TALTAQPGST ITDGTYVFKN NAGSSGSRGI SLGGTVKGTT NKNSVSITAD DKSNTNFFES GSTFENATIN VTSQARTWND ARNLTLKNTD LKVKGFGQTF YVNQLNMTDS TLTINPSYWG QTGMTIQGPS NIVNSTINAN AGSTSGISVG VAGGTVNVTN STLNFTNGGT GGLNVNTGNV IINNSTIKGD GRNSGALFGA QTNGSIQFTG NSLVETPATK NSDNGAGQTR QNYNVVGGSY LLKYAPDYNS GFGSTIPTNG AANGNEALSL FTLADVSTNS LSLINANGAT YTYPVANASS DGQKHVWAPA ATVTFDLNAP GVTGINPTFA DGTTANKTAL AMRGNSLATA SSVAEGSTTL PADPYASGQE FDGWYYTDAS GTEHQFTADT QVTSDMTVYP HWKANTSWLY VRYHNGNGVS VIDRVATNAN RTVTVRSNTE VNNLNNNFNI AGKTFKRWTT QANGAGDEVA ANSNLAIPTG TDTIDLYADW EEQRLTVSFS ANGGTFSANS VFKQNPNVFD ITTDANGGEV ATIKTHPTVA EQTNINALLR NLSGNTLSAT TAGIASPTDS NTNTAYTNIA TLENHILDSE DKPKTFFGFV VGHDYHYWFT DAAGNSPATI NGGATLTNDV TYYLKWKDDP SIQKVELTSD LPADMWSDSQ NNTTQIKEVS NDKSFSLTGA IDATSVINQM TNFENNIAGG LDDLTKITLS GTTSTFTAKL TLPAGVVVPA NPTVTTSGLG DLFDVSNVSV NGQEVTVTLK LKNTYSNYKQ LKDAVETVGK DDAATAEIAR PLTVTVNGLT LDSTQVTNGQ ELTATGTLTG TFESYAKNTV TNVTKKYNLS WNGVQITANR DPRGTDIQQT LIVNNPIDMN IPADMLADEN TEHDQVITMK AGSTFNLTGS ILASSIQEQM NNIERAYPNT NHDTITLSNL KFKFTATLTV PEGMTLPSNL DASTVQASNF GSGFKVSDVQ VNGRTVTVTF ELSDPSSIRT YSDLERIVDE ASANGGWMKL TIPGVTIDSN VAAGTQLTAV GTVTGSFSAI ADSAAGNRKA FSFTWNGVQW PDGKDAVATN NDTIQLTITV AEDKTPETPS PSTPTKKKPS KKKKTPYTGD ASVAAPLGVL LAGMTTVMTS LGITKRRKNK
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