Gene Apar_0248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0248 
Symbol 
ID8413096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp290141 
End bp290752 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content42% 
IMG OID645021816 
ProductSirA family protein 
Protein accessionYP_003179271 
Protein GI257784054 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0425] Predicted redox protein, regulator of disulfide bond formation 
TIGRFAM ID[TIGR03527] selenium metabolism protein YedF 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.322 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATTG ATGCTCGAAA TTTAACGTGT CCAAAGCCAG TTATTTTAAC GCTTGAGGCT 
CTCCCTAAGC TTTCTTCTGG AGAAAAACTT GATGTCGTTA TTAACGATAA TGTTGCTTTT
GGAAATCTTA CCCGCCTTGC TGATGAGAAG AACTGTGATT TGACTTCTGT AAAGAATGGT
TCAGATACAA CAATGACTTT TAGCCCTCGT AATAAAGTTG AAGCTAGTGA TTCAGCAGTT
GTTGAGGCTT CTCAGTTTTG TGATATCCCA GATCGTTCTG CAACCGTTGT TGCGGTTGAT
GCTGAGTATA TGGGTCGCGG TAATGATGAG CTCGGTCATA TTTTAATGAA GGGTCTTATC
TACGCTCTTG CACATCAGGA TACGGTTCCT GAAACTATGT TGTTTTACAA CGGTGGTGCT
CATCTGACCT GTGAAGGTTC AGAGTCACTC GAAGATATAA AGGAGCTTGA GTCTCGTGGT
ACCAAGATTT TAACGTGTGG TACCTGCCTT GATTTCTATG GCATTAAAGA CAAACTTGCA
GTAGGTGATG TCACCAATCT ATATGCAATT GCAGAGATTA TTTCACAACA GCCGGGCGTG
ATGGTGCTCT AA
 
Protein sequence
MKIDARNLTC PKPVILTLEA LPKLSSGEKL DVVINDNVAF GNLTRLADEK NCDLTSVKNG 
SDTTMTFSPR NKVEASDSAV VEASQFCDIP DRSATVVAVD AEYMGRGNDE LGHILMKGLI
YALAHQDTVP ETMLFYNGGA HLTCEGSESL EDIKELESRG TKILTCGTCL DFYGIKDKLA
VGDVTNLYAI AEIISQQPGV MVL