| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0240 |
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| Symbol | |
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| ID | 8413088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 282264 |
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| End bp | 283646 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645021808 |
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| Product | peptidase |
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| Protein accession | YP_003179263 |
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| Protein GI | 257784046 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR03320] M20/DapE family protein YgeY
[TIGR03526] putative selenium metabolism hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000787577 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.24947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGACT TGGATTACGG CGCAATTAAG GATGCAGCAA ACAAGTATTC AAAAGATATG
ACCGCGTTTC TGCGCGCAAT GATTTCACAC CCTAGTGAGT CCTCAGAAGA GGGCGAGGTT
GTCGCATGCA TTAAAGCTGA GATGGAGAAG CTTGGCTTTG ATGAGGTAAA AGTTGACGGC
CTTGGCAACG TTATGGGCTT TATGGGCACT GGCGATAAAA TCATCGCAAT CGACGGTCAC
ATTGATACCG TTGGTATTGG TAATCGTGAC AACTGGGATT TTGATCCTTA TGAGGGCTTT
GAGGACGATC AGCTCATTGG TGGTCGTGGT GGCTCTGACC AGGAAGGCGG CGTCTGCTCA
GGCGTATATG CTGCAAAGAT TATGAAGGAT ATGAACCTTA TTCCTGAGGG CTACAAGGTT
ATGGTTGTTG GTACTGTCCA GGAAGAGGAC TGCGACGGTA TGTGCTGGCA GTACATCTAC
AATGTTGACA AGATTAAGCC AGAGTTTGTA ATCTCAACCG AGCCTACTGA TGGTGGTATT
TATCGCGGTC ACCGTGGCCG TATGGAGATC CGTGTTGACG TCAAGGGCGT TTCTTGCCAC
GGTTCAGCTC CTGAGCGTGG TGACAACGCA ATTTATAAGA TGGCTGACAT CATTAATGAC
GTTCGTGCAC TTAACAATAA TGGTGCTGAT GAATCCACTG CTATTCGCGG CCTTGTTAAG
ATGCTTGATC CTAAGTACAA CCCTGATCAC TATGAGGATG CTCGCTTCCT CGGCCGTGGT
ACCTGCACCG TTTCTCAGAT TTACTTCACA AGCCCTTCTC GCTGCGCTGT TGCAGACTCT
TGTGCAATTT CCATTGACCG TCGTATGACC GCTGGTGAGA CCTATAAGAG CTGCCTCAAA
GAGATTGAGG AGCTTCCTTC CGTCAAAAAG TATGGCGACG ACGTCAAGGT CTCCATGTAC
ATGTATGACC GTCCTTCTTG GACTGGCGAG GTTTATGAGA CTGAGTCTTA CTTCCCAACA
TGGATCAACA AAGAGTCCGC TCCACACGTT AAGGCACTTG TTGATGCTCA CAAGGCACTC
TTTGGTGATA AGCGCATTGG TTGCGAGAAG TCCATGGCAA CTCGTGAAGG TCGTCCTCTA
TGCGATAAGT GGACCTTCTC TACAAATTGC GTTTCTATCC AGGGTCGTTA TGGTATTCCT
TGCGTTGGCT TTGGACCAGG TGCTGAGTCT CAGGCACATG CTCCAAATGA GATTACCTTC
AAGCAGGATC TTCCTACTTG TGCAGCACTG TATGTTGCAG CTCTCAACCT GTATGACGCT
TCTGCAGTAA CTGATGATGC AACTGAATTC CGTGCAAGTC TTACCGATAA CAACATTAAG
TAA
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| Protein sequence | MKDLDYGAIK DAANKYSKDM TAFLRAMISH PSESSEEGEV VACIKAEMEK LGFDEVKVDG
LGNVMGFMGT GDKIIAIDGH IDTVGIGNRD NWDFDPYEGF EDDQLIGGRG GSDQEGGVCS
GVYAAKIMKD MNLIPEGYKV MVVGTVQEED CDGMCWQYIY NVDKIKPEFV ISTEPTDGGI
YRGHRGRMEI RVDVKGVSCH GSAPERGDNA IYKMADIIND VRALNNNGAD ESTAIRGLVK
MLDPKYNPDH YEDARFLGRG TCTVSQIYFT SPSRCAVADS CAISIDRRMT AGETYKSCLK
EIEELPSVKK YGDDVKVSMY MYDRPSWTGE VYETESYFPT WINKESAPHV KALVDAHKAL
FGDKRIGCEK SMATREGRPL CDKWTFSTNC VSIQGRYGIP CVGFGPGAES QAHAPNEITF
KQDLPTCAAL YVAALNLYDA SAVTDDATEF RASLTDNNIK
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