Gene Apar_0234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0234 
Symbol 
ID8413082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp270610 
End bp272073 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content43% 
IMG OID645021802 
Producturacil-xanthine permease 
Protein accessionYP_003179257 
Protein GI257784040 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG2233] Xanthine/uracil permeases 
TIGRFAM ID[TIGR00801] uracil-xanthine permease 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.72868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGATT CAAAGAAATC CATTTTGTTT CAATGGGATG GGGTACCGTC TGTTGGCGAG 
CTTATTCCAC TTTCATTACA GCATGTAGTT GCAGCTGTAG TGGGCATCAT TACACCTGCA
ATTATTATTG CGGGTGTTTG CAACCTTGCG CCAGCGGATA AAACACTGCT TATTCAAGTT
TCGTTAGTAA TGTCTGGATT AGTTACTATT TTGCAGGCAT ATCCACTCTT CGGCAAGTTT
GGTGCAGGGT TACCGATAAT TATGGGCACA AGTTTTGCCT ACGTACCTAC CTTGCAAGCT
ATTGGCGCCG CTAATGGAAT TGGGGCCATT CTTGGAGCTG AACTTATCGG TGGTATCGTT
GCTGTTTTGT TTGGTTTCTT CTTTAAGAAG ATTCGTGTGT TATTCCCTAA TGTTGTAACA
GGTACCGTAG TACTTTGCAT TGGTCTTTCT CTATATAGCG TTGCTATTGG ATATATGGCC
GGTGGTAAGA GCTCAGCAAA CTTTGGTGCT CCTCAAAACT GGATTGTTGC TCTTATTACT
CTTGCTGCAT GTATTTACTT CAGTAATTTT GCTAAAGGTG TTTTCAAGCT CGGATCTTTA
CTTTTTGGCA TGCTCGTAGG TTATGTTGTT TCCATTCCTT TTGGCATGAT TAACTACGAG
TCTGTAGTCA ATGCTTCTTG GGTTGAGCTT CCTCACTTTA TGCCTTTTGC TCTTGAATTT
GTTCCAGCAA CAATTGCTTC GGTAACTATT GTCTTTATTG TTGCTGCACT TGAGGCTGTT
GGTAACATGA CTGGTGCAAC GGTAGGCGGT ATGGATCGTG AACCCACCGA TACAGAGCTT
ACTGGTGGTC TTGTTTCTCA GGGTGTTATG ACTATGGTTG GTGCTTTCTT TGGAGCATTC
CCAACTTCAA CATATGGTCA AAATGTTGGT ATCGTGACAC AAACTCGTGT TATTAATCGT
CGTGTTTTTG CGGTTGCAGG TGCAATCCTT TTGGTAGCCG GTTTGGCTCC AAAGTTAGCG
GCAATTCTTT CAGGCATTCC TCAGCCTGTT ATTGGCGGAG CTACTATTAA CGTATTCGGT
ACTATTTCAA TGACTGGTAT TCGTATTCTT TCTAAAGATG GTCTTACTCC TCGTAGAGCA
ACTATCGCAG GTTTGTCTCT TGCGTTAGGT ATGGGTATTA CCATGACGTC TAACTCTCTT
GCAGGTCCTG GAATGCCTGC GTTTATTAAT GAGGTATTTG GACATTCTGC TATTGTTGTT
GCAGCGCTTT CTGCCATTAT TCTTAATCTT GTTCTTCCTA AGGGTGGACC TGATAAGGAA
GTTGTTGAAG CGGTTGAGGG AGCTGCAGAA GTACAGGAAG AAGCAGTTGG AGCATTGTAT
AAATCAGCTG CGACAGGTGT ACCTGCAGTT GAGCATAAGC CAGGTTCTGT TAAGGCGTAT
AAAACAGGCT ATAAGTCTGA GTAG
 
Protein sequence
MADSKKSILF QWDGVPSVGE LIPLSLQHVV AAVVGIITPA IIIAGVCNLA PADKTLLIQV 
SLVMSGLVTI LQAYPLFGKF GAGLPIIMGT SFAYVPTLQA IGAANGIGAI LGAELIGGIV
AVLFGFFFKK IRVLFPNVVT GTVVLCIGLS LYSVAIGYMA GGKSSANFGA PQNWIVALIT
LAACIYFSNF AKGVFKLGSL LFGMLVGYVV SIPFGMINYE SVVNASWVEL PHFMPFALEF
VPATIASVTI VFIVAALEAV GNMTGATVGG MDREPTDTEL TGGLVSQGVM TMVGAFFGAF
PTSTYGQNVG IVTQTRVINR RVFAVAGAIL LVAGLAPKLA AILSGIPQPV IGGATINVFG
TISMTGIRIL SKDGLTPRRA TIAGLSLALG MGITMTSNSL AGPGMPAFIN EVFGHSAIVV
AALSAIILNL VLPKGGPDKE VVEAVEGAAE VQEEAVGALY KSAATGVPAV EHKPGSVKAY
KTGYKSE