| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0228 |
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| Symbol | |
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| ID | 8413076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 263971 |
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| End bp | 265368 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645021796 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003179251 |
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| Protein GI | 257784034 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCATT TTGATCGCAA GCTCCAACAA CAAGAGTCTG ACACATCATC TGCTTCTGAT
AACACAACAG ATGTTATTTC TCGTATAGGA GTAATAACCC CTACTGAAGA TGAAGAAGAT
GCAGAGGCAC GCGAGGCATA TGAAAGCCTT ATGCGTCATC GCAAGATTCG TCGTAGAAAA
AAATTTATAA AAGTAGGCAT TGTACTGGGT ATTGTTGTGC TAGTCGCAAT ACTGGTAATA
CTGCGTTTGT TGCAAGATGC CAATCAAGTC GAGGCTCCTG TTACAAGTAC TACATTCATT
ACGCGTGGAG AATTCATTGA CTCCGTATCT GCTTCAGGTT CCATTAAGCC AATTTCTTCA
ACGGTGGTGA CTCCTGAGGT CAATGGAATC ATACAGGACG TGCAGGTTAC AGAAGGTTCA
ACGGTTAAAA AGGGCGATAA ACTTTTTACC ATTAAAAATG ATGAGCTTGA TAAAGCGGTG
CGCAAAGCTG CACAGCAAGT AAAGGCGGCC GAGAACGAGG TCAGCAAGGC TCGTTCTGCT
TTGGTTTCTG CACGCAACGG TGTCTCCGAG GTAGGTGAGA ATGGTCAGGA GGCAAATGCT
GCGTCCGGTG CGGCGGCTGT TGAAGCGGCT GAAGCAAATC TTGAGAGTGC TCAGATTGCA
CTTGAGGAGG CTCGTTCTGC CTATAACGAC GCAGTTGACC AGGCAGATAA ACGTGTAGTC
ACCGCGCCCT GTGATGGTAC GGTTATTGTG ATGAACGCGG TAAACGGTGC TTCTGTTGGT
TCGTCTGCAC CAGGCTCTGG TAATAGCGGT CCTCTGATTA CTATCGCAGA CCTTTCCCAA
ATGAAGGTAA ACGTCCAGAT TAACGAGGTA GATATTTCTC GTATCGCTGC TGACCAGAAG
GCGCAGGTTA CTTTCACTGC CTTGAGAGAC CTATATTGCG ACGCGGTTGT TACTCACGTT
TCTGCTGTTT CATCTAGCGG AGCCGACGCT AGTACAAGCT ATGATAGCCC TGGTCGCTCT
ATTGTTTCCT ATACCGTTGA TCTTCTCATT AGTAGCCCTG ATGCGTCCAT CAAGCCAGGC
ATGACCGCCA ACGTGGACAT CATGATTCAG CACATGGACA ACGTTTTGAC TGTGCCTCTT
GTTGCCGTCA TGGACGATGG TGATGGCGCT TACGTTAACG TTGTTACTTC TCGTGACGAG
AAAGGCCATC TGCAGGTTAA GCGCGTACCA GTAACCGTTA AAGCACAAAG CTCCACGACG
GCTGTCATTG AGGGCGCCGG CATTGAGGAC GGTACTGAGG TAATGATTGG CGGCGGCAGC
GGTCCGTCTC AGGGTGCGGA TATGGACGCT CCAGAAGGTG CAACAGCTGG CTCGACAGGC
TCTAAAGACT CCAAGTAG
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| Protein sequence | MFHFDRKLQQ QESDTSSASD NTTDVISRIG VITPTEDEED AEAREAYESL MRHRKIRRRK
KFIKVGIVLG IVVLVAILVI LRLLQDANQV EAPVTSTTFI TRGEFIDSVS ASGSIKPISS
TVVTPEVNGI IQDVQVTEGS TVKKGDKLFT IKNDELDKAV RKAAQQVKAA ENEVSKARSA
LVSARNGVSE VGENGQEANA ASGAAAVEAA EANLESAQIA LEEARSAYND AVDQADKRVV
TAPCDGTVIV MNAVNGASVG SSAPGSGNSG PLITIADLSQ MKVNVQINEV DISRIAADQK
AQVTFTALRD LYCDAVVTHV SAVSSSGADA STSYDSPGRS IVSYTVDLLI SSPDASIKPG
MTANVDIMIQ HMDNVLTVPL VAVMDDGDGA YVNVVTSRDE KGHLQVKRVP VTVKAQSSTT
AVIEGAGIED GTEVMIGGGS GPSQGADMDA PEGATAGSTG SKDSK
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