| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0197 |
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| Symbol | |
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| ID | 8413045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 233616 |
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| End bp | 236993 |
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| Gene Length | 3378 bp |
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| Protein Length | 1125 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645021766 |
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| Product | type III restriction protein res subunit |
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| Protein accession | YP_003179221 |
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| Protein GI | 257784004 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000621753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATTTCA GCTTCCTTAA GGACATTAAA GAGTACGAGA TGTTCTCTGG CGCTTGCGAA
GATGCAGAAC GCACCTTCGC ATCAAGTCCC GCTATGTGCG CACTTGCATG CCGTAAGGCG
ATGGAACTTG CCGTCAAATG GGTTTATGCG GCCGACGAAA CAATGAACGA GCCATGGCGT
AGCAACCTCG CCTCCCTCAT TCATGAGGCA AGCTTCAAGA ATGCCATGGA CACTACTACC
TGGGGCCAGC TGCGCTACAT CTGGAAGCTC GGCAACAACG CGGCTCACAC CCAACGGCAA
ATTGATGCAC GCGATGCCCT CGCTGCATTA GCAGGACTTT TTAACTTCGT TGAGTGGATT
GACTACTGCT ATGGGCCAAG TTACGAGGAG CGCCATTTTG ATCCCAAGGC GATTCCCGTC
CTGAAACAGG CGCTTGACGA GCAGAAACTG CGAAAGACCC TGCAGGAGAA TGCAGAAAAA
GATGCTCGCA TAGCCCAACT GGAAGAGCAG GTGAGGGCAC AGCGGGCACA GTTCAGCGAA
ACCAAGGAGC AGCGCCCCGA GGAAACGCAT TTCAATCCGG ATGAGATTCC CGAATATGAG
ACGCGCAAGC GCTATATCGA TGTTGATCTT GAATATGCAG GTTGGAACCT CGATGACAGT
GTAAAGACCG AGGCTGAAGT TAGCGGTATG CCGAACCCCA CGGGTACTGG ATTTATCGAT
TACGTACTTC TGGGCAGGAA TGGCAAGCCC TTGGCAATCG TCGAGGCCAA GCGCACCATG
TACGATCCCT TGAAAGGTGA GCAACAGGCT CGTCTCTATG CAAACTGCCT GGAAAAGAAG
TACGGGTACC GACCCTTCGT CTTCCTCTCC AATGGCTTTG AGACGCGCTT CATGGATGAC
GGAACTGCTG CACCTCGTGC CTGTTCGGGC GTCTTTGGCA GAGAAGATCT CGAGCGCCTT
ATGAACAGGC GCGGTAAGGT AAAGAATCTT TCCACCGTGC CCGTCAATCG CGACATTGCT
GGCGGCGGGC GAAACCGCTA CTACCAGGTA GAGGCCATTG AAGCCGTGTG CCAGAATATG
GAAGAAGGGC ATCGGAGAAG CCTTCTCGTT ATGGCCACGG GAACTGGAAA GACGCGAACC
GCAGCAGGTT TGGTGGACGT GCTCTCCCGT GCGGGAGCGG TGACTAACGT TCTTTTCCTT
GCAGACCGTG TTGCATTGGT TCGACAGGCA AAGAATGCCT TCCAAAACTA CCTAACCACA
ATGACCGTGT GCAACCTTTG TGAGACCGAT GACAAGGCGA AGAATGTCGA TGCACGCATT
GTATTCTCCA CGTACCCCAC CATATTGAAT GCGGTAGATG ACGTGAAGAG AGATGGGGAT
GCGCGCCTGT TTACGCCGGC TCATTTCGAC CTCATCATCG TTGACGAAGC CCATCGTTCT
ATTTTCAAAA AATACCGCGC CATTTTCGAT TACTTCGATT CACCGGTGGT TGGGCTCACG
GCAACCCCCA AAGATGAAGT CGATCGCAAT ACTTATGACT TCTTCCAAGT CGAACGCGGT
ATCCCAACGT ACCTCTACGA GTATGCGACC GCGGTTGAGA AAGACAAGGT TCTCGTCCCC
TACTACAACA TCGAGGTCCA GACGAACTTT CTCTCCAAGG GCATCACATA TGACGAGCTA
TCGGAGGAAG ATCGCCAGCG CTACGACGAT GACTGGGAGG AAGCGCAGGG AACTTCCGCA
CCTGATTACG TCGAGGCAAG CGCGCTAGAC CGCTTTGTAT TCAACGAGCA CACAATCGAT
CTCGTCCTTA CGACCCTCAT GGATGAGGGA ATCAAAATCA AGGGCGGCGA GCACATAGGA
AAGACGATCA TCTTCGCCCA GAACCGCAAG CATGCAGAGA TAATCGTCAA ACGCTTCAAC
GAGCTCTATC CGAAGTTTGG CGCACAAGGT TTTTGCAAGC GCGTTGTGCA CACGGACGAT
TACGCCCCAA CTGTTATTAC TGACTTCGAG ACGAAGGAAA TGCCCACCAT CACCGTGTCT
GTCGACATGA TGGACACGGG TATCGACGTG CCCGAAGTCG TTAACCTCGT GTTCTTCAAG
CAAGTGAAGT CGAAGGTCAA GTTCTGGCAG ATGATAGGAC GTGGAACCAG GCTTTGTGAG
GGAATACATG CCCAAGACAA AGTGTCTGGA GAATACGAAG ACAAGAAGCA CTTCTTCATT
TTCGACTGGT GCGGTAACTT CGAGTTTTTC CGCCAGGAGC AAAAGTTAGC AGAGGGTGCT
AACCCGGAAA GCATGCAGGA GAAGGTTTTC AAGCGTCAGG CTCTGCTTGC CCAAGCCCTG
CAGGGAGCAG ATTTCGCATC TGATGATTAC CAGGAGTGGC GCGTCCGAGT AGTCCAGGAA
ATGGCGGTTA AAGTCCAAAG CGTTAAGGAA CCGCTTACTG CTGCGGTCAA ATTGCACATC
CGTGAAGTTG ACAAGTTCTC GCAAGTTCCT TCATATCAAG TCCTCGAGGA CGTAGATATA
GCAGACCTCA ACAAGGTCGC CCCTCTAGTG CGTGCAGATG GTGAAGAAGA GCTCTCATTG
CGCTTCGATG CGCTCATGTA TGCCTATATG GTGGTGCTCA TAAGTGGAAC CAACACAGAA
AACCATCGCA CACGCGTGGT GGGCATTGCC GTGAGGCTGC AAAATAAGGC AAGCATTCCC
CAGGTGCGGG AGAAAATGGA TCTCCTGAAA CGCGTTACAT CCGAGGGCTT CCTTGAGAGT
GCAAGTCTAA TCACGCTTGA AGAGGTACGC GTAGAGCTGC GTGACCTTAT GAAGTTCCTC
ATCGGCGACA GCAGGCCTCT GATGGTGGAA ACGCGAGTCA CCGACTCCGT TGTTGGACGC
TGCGAGGGCG ATGCTATTAG CCCTAAAGAG GATTTCGAGG ACTATAAGCT AAAGGTAAGT
CGCTATATCG CTCAGAATGC GAACCACACG GTAATCGCCA AGATTCATCA CAACCAACAG
ATGACTTCCT TCGAGCTCAA TGAGCTGGAG CGTATTTTCA CGGTCGAACT AGGTAATGAA
GCGGACTATC GAGCCGCTTA TGGTGACACT CCATTCGGGA AGCTTGTACG GCAAGTTGCA
GGTCTTTCGC ATGAAGCCGC GATGGATGCT TTTGCGGAAT TTCTAGGAGA CGAGTCTCTT
TCGCGCCAGC AGATGGATTT CGTTCACAAG ATCGTCGACT ACGTAGAGAC CAATGGCTTT
ATGGATTTGG CCGATTTGGG CAAGCCTCCA TTTGATCAAC CGCAGAGCTT CGTAAGGCTC
TTCGACGGAA GAAGGCAACG ACGCCTCGTG CAGATTATTC AATCGGTAAA CGACAACGCT
ACCACGCCTG CCGCTTAA
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| Protein sequence | MNFSFLKDIK EYEMFSGACE DAERTFASSP AMCALACRKA MELAVKWVYA ADETMNEPWR
SNLASLIHEA SFKNAMDTTT WGQLRYIWKL GNNAAHTQRQ IDARDALAAL AGLFNFVEWI
DYCYGPSYEE RHFDPKAIPV LKQALDEQKL RKTLQENAEK DARIAQLEEQ VRAQRAQFSE
TKEQRPEETH FNPDEIPEYE TRKRYIDVDL EYAGWNLDDS VKTEAEVSGM PNPTGTGFID
YVLLGRNGKP LAIVEAKRTM YDPLKGEQQA RLYANCLEKK YGYRPFVFLS NGFETRFMDD
GTAAPRACSG VFGREDLERL MNRRGKVKNL STVPVNRDIA GGGRNRYYQV EAIEAVCQNM
EEGHRRSLLV MATGTGKTRT AAGLVDVLSR AGAVTNVLFL ADRVALVRQA KNAFQNYLTT
MTVCNLCETD DKAKNVDARI VFSTYPTILN AVDDVKRDGD ARLFTPAHFD LIIVDEAHRS
IFKKYRAIFD YFDSPVVGLT ATPKDEVDRN TYDFFQVERG IPTYLYEYAT AVEKDKVLVP
YYNIEVQTNF LSKGITYDEL SEEDRQRYDD DWEEAQGTSA PDYVEASALD RFVFNEHTID
LVLTTLMDEG IKIKGGEHIG KTIIFAQNRK HAEIIVKRFN ELYPKFGAQG FCKRVVHTDD
YAPTVITDFE TKEMPTITVS VDMMDTGIDV PEVVNLVFFK QVKSKVKFWQ MIGRGTRLCE
GIHAQDKVSG EYEDKKHFFI FDWCGNFEFF RQEQKLAEGA NPESMQEKVF KRQALLAQAL
QGADFASDDY QEWRVRVVQE MAVKVQSVKE PLTAAVKLHI REVDKFSQVP SYQVLEDVDI
ADLNKVAPLV RADGEEELSL RFDALMYAYM VVLISGTNTE NHRTRVVGIA VRLQNKASIP
QVREKMDLLK RVTSEGFLES ASLITLEEVR VELRDLMKFL IGDSRPLMVE TRVTDSVVGR
CEGDAISPKE DFEDYKLKVS RYIAQNANHT VIAKIHHNQQ MTSFELNELE RIFTVELGNE
ADYRAAYGDT PFGKLVRQVA GLSHEAAMDA FAEFLGDESL SRQQMDFVHK IVDYVETNGF
MDLADLGKPP FDQPQSFVRL FDGRRQRRLV QIIQSVNDNA TTPAA
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