| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0196 |
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| Symbol | |
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| ID | 8413044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 232534 |
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| End bp | 233520 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645021765 |
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| Product | integrase family protein |
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| Protein accession | YP_003179220 |
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| Protein GI | 257784003 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000565414 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGAAT ACAAGCAGAC AATCAGCAGG ATTGAACACT TGATGGAGGG AGCACTGAGC
GGAAGTCAGA GGGACCTCCT TCACGCAGTG TTGCGCCAAT GCCTGGATGA TGATGCGGCC
AGGGCAGACG CAAAGACATC GATGAGCAAT AAGCGGATGC TTGATGCGTT TTATGCAGCC
AAGCGACTGG AGGGATGCTC TGAACGCACG ATAAGCTACT ACGCAAGTGT TCTGCATCAT
TACATGGTGA ACATCACAAC GGGATTTCGC CAGGTAACAA CTGAGGAAGT GCGCAGCTAC
CTCATTGAGT ACGGGCAACG TAAAGGCGTC TCTAAAATCA CGGTCGACAA CGTGCGGCGG
GTTATCTCAA GCCTTTTCTC TTGGCTTGAG GCGGAGGATT ACATCCTGAA GAGTCCTGTA
AGGCGCATTA AGAAGATTCG TTCTCCTCGG AACATCAAGC CCGTAATCAC TGATGACGAA
CTTGAAACCA TGCGTGATGG ATGTACATGC GTTCGAGATC TAGCGCTCGT AGACCTTCTC
ACTTCATCGG GTATGCGCGT TGGCGAGCTT GTGAGACTCA ATCGAGAAGA CATCGACTTT
GAGGGCAGGC AATGCGTAGT GAGAGGCAAA GGCGACAAGG AGCGCAGAGT CTATTTTGAT
GCGCGTACTA AAGTGCACCT GCATGAGTAC CTAAATAGTC GCCATGATGA GAACCCTGCT
TTGTTTATTT CACTCGATGG AACAAAGAAG CGCCTTGAAA TTAGCGGGGT AGAGCTGCGA
CTGCGCATGC TGGGCAGATC TCTCGGGCTT CCGAGGGTGC ACCCACATAA ATTCAGAAGA
ACCATGGCCA CTCGAGCCAT CGATAAAGGA ATGCCAATAG AGCAGGTGCA GGTGTTGTTG
GGACATAGCA AGATAGATAC CACACTGTGT TACGCGATGG TTGACCAAGA AAATGTCAAA
CAAGCCCATC GAAAATTTAT CGCCTAG
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| Protein sequence | MNEYKQTISR IEHLMEGALS GSQRDLLHAV LRQCLDDDAA RADAKTSMSN KRMLDAFYAA
KRLEGCSERT ISYYASVLHH YMVNITTGFR QVTTEEVRSY LIEYGQRKGV SKITVDNVRR
VISSLFSWLE AEDYILKSPV RRIKKIRSPR NIKPVITDDE LETMRDGCTC VRDLALVDLL
TSSGMRVGEL VRLNREDIDF EGRQCVVRGK GDKERRVYFD ARTKVHLHEY LNSRHDENPA
LFISLDGTKK RLEISGVELR LRMLGRSLGL PRVHPHKFRR TMATRAIDKG MPIEQVQVLL
GHSKIDTTLC YAMVDQENVK QAHRKFIA
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