| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0189 |
|---|
| Symbol | |
|---|
| ID | 8413037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 223435 |
|---|
| End bp | 225024 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 645021761 |
|---|
| Product | GMP synthase, large subunit |
|---|
| Protein accession | YP_003179216 |
|---|
| Protein GI | 257783999 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0519] GMP synthase, PP-ATPase domain/subunit |
|---|
| TIGRFAM ID | [TIGR00884] GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit
[TIGR00888] GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0433911 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGT CCAGGCCCAA GCAGTTTGTT GCAGTTCTAG ACTTTGGTGC CCAGTACGGC
CAGTTAATTG CACGTCGCGT GCGCGATCTT AACGTCTACT CCGAGATTGT TCCTTGTGAT
ATTTCCGCAG ATGAGCTTCG TGAGCTTAAT CCATCTGCGC TTATTTTGTC CGGCGGCCCT
GCTTCCGTTT ACGCCGAGGA CGCGCCAAAG ATTGACCCAG AGATTCTGGA GCTTGGTATT
CCTGTCTTTG GTTTCTGCTA TGGACAGCAG ATTATGGCGG TTACCCTGGG CGGCACTGTT
GGACATACCG AGAAGGGCGA GTATGGCCCA GCTCATCTGA CTCGTGCAGG GGAGAGTCGT
ATTTTTGACG GCACCGCTGA GCAGCAGACC GTTTGGATGA GCCACCGCGA CGCTGTCTCT
GAGGTTCCAG ATGGCTTTAC CGTTACCGCT TCTACCGACG TTTGCCCTAT TGCAGCTATG
GAAAACGCTG CTAAGAATCT ATATTCAACT CAGTTTCATC CAGAGGTCAA CCACACCGAA
TGTGGTTCCC AGATGCTTTC TAACTTTCTA TTTAATATCT GTGGCTTTGA AAAGACTTGG
ACTATGGACA ACATCATTGA GCAGAAAGTG GAGGAGATTC GCCAGAAGGT TGGTAATGGA
CGTGTCATTT TGGCGCTCTC CGGTGGCGTA GACTCTTCCG TTGTTGCCGC TCTTGTCCAT
CGTGCTATTG GTGATCAGCT GACCTGCGTG TTTGTCAATC ACGGTATGCT TCGTAAGGGC
GAACCAGAGA TGGTTGAGCA GGTCTTCTGC AAGCAGTTTA ACGTGCCTTT GATTCACGTT
CACGCGGAGG AGCGCTACGC AGAGCTTTTA GCTGGCGTTA CTGAGCCAGA GAAGAAGCGT
CGTCTGATTG GTACCGAGTT CTGGAAGGTC TTCTTTGATG AGGCTCAGAA GCTGGATGGC
GTTCAGTTCC TGGCACAGGG CACCATTTAT CCTGACATTA TTGAGTCTGG CGCTCGTAAG
ACGGGCGGTA AGGCTGCAAC CATCAAGAGC CACCACAACC TGATTCCATT CCCAGAAGGC
GTTCACTTTG ACCTGATTGA GCCTCTGGAT CACTTCTTCA AGGACGAGGT CCGCGCGCTG
GGCGTTTCTC TTGGTCTGCC AGAGAACCTT GTCTACAGAC AGCCTTTCCC AGGTCCTGGT
CTTGCTATCC GCATCATTGG TGACGTTACC CCAGAAAAGC TGGAAATTCT TCGCAACGCA
GATGCAATTG TCCGAGAAGA GATTGACGCT TACAATGCTC AGCTCTTTGA CGAGACAGGC
GATCGTAACT CCGAGCACAG TGTTTGGCAG TACTTTGCTG TGCTACCCGA CATTAAGTCC
GTTGGTGTTA TGGGTGATGA GCGCACGTAT GCTCGTCCAG TTATCCTGCG CGCCGTTGAG
TCCAGTGACG CTATGACCGC TGACTGGGCA AAGCTCCCAT ATGAGCTGCT AACTCGCATT
TCTTCTAGGA TTGTTAGCGA GGTTGCTGGT GTTAACCGCG TAGCATACGA CATTACTCCT
AAGCCACCTG CGACTATTGA GTGGGAGTAG
|
|---|
| Protein sequence | MSESRPKQFV AVLDFGAQYG QLIARRVRDL NVYSEIVPCD ISADELRELN PSALILSGGP
ASVYAEDAPK IDPEILELGI PVFGFCYGQQ IMAVTLGGTV GHTEKGEYGP AHLTRAGESR
IFDGTAEQQT VWMSHRDAVS EVPDGFTVTA STDVCPIAAM ENAAKNLYST QFHPEVNHTE
CGSQMLSNFL FNICGFEKTW TMDNIIEQKV EEIRQKVGNG RVILALSGGV DSSVVAALVH
RAIGDQLTCV FVNHGMLRKG EPEMVEQVFC KQFNVPLIHV HAEERYAELL AGVTEPEKKR
RLIGTEFWKV FFDEAQKLDG VQFLAQGTIY PDIIESGARK TGGKAATIKS HHNLIPFPEG
VHFDLIEPLD HFFKDEVRAL GVSLGLPENL VYRQPFPGPG LAIRIIGDVT PEKLEILRNA
DAIVREEIDA YNAQLFDETG DRNSEHSVWQ YFAVLPDIKS VGVMGDERTY ARPVILRAVE
SSDAMTADWA KLPYELLTRI SSRIVSEVAG VNRVAYDITP KPPATIEWE
|
|---|
| |