Gene Apar_0176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0176 
Symbol 
ID8413024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp202008 
End bp204767 
Gene Length2760 bp 
Protein Length919 aa 
Translation table11 
GC content39% 
IMG OID645021748 
Producttype II restriction enzyme methylase subunits- like protein 
Protein accessionYP_003179203 
Protein GI257783986 
COG category[V] Defense mechanisms 
COG ID[COG1002] Type II restriction enzyme, methylase subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTGTG ATAAGAAAGA GCTTCTAGAA TTTGTCTCCC GCTGGCAAGG CAGGGGTTAT 
GAAAAAGGAG ATACTCAGCA ATTCTGGCTA CAGCTCTTAC GCACTATTGG TTATCTCAAG
GTAGATGACG TTCTCTTTGA ATTTCACGTC TCATCTGGTG GATTTATTGA TGTATGGATT
CCTGACGCTG GAGTTTTAAT TGAACAAAAG GCTCTTGGTA TTGATTTAGA CAAAGAAGAA
CTCCGTCAAG GTAAACAAAA GACACCTTTA ACCCAAGCAC TTGATTATGT TGACGAGCTT
CCTAGGCTAG AGCAGCCTCG CTTCGTCATT ACGTGTAATT TCTCTACCTT TAGAGTGTAT
GATCGTGATG CACACGGAAG GTCGCAACTT CCTAATAATG CATTCGAGTT CACTCTTGAT
GAGCTTGCAA GCCATCCAGA GTATCTTGCT TTTATCAATG ACCCCACTAA CAGCCGTCTT
GAAAAAGAAA AGACGGTATC CATTAAAGCA GGAGATCTTA TTGGAAAGCT CTATGACAAA
CTGCGTGAAG GATATATTGA CCCTGATTCA GAAGAGTCAA TGCATGCATT AAACGTACTT
TGCGTACGTC TAGTATTTTG TTTATATTGC GAAGATGCAG GACTCTTTGG AAAAGACGCT
TTCTATAACT ATCTGAAAGA TGTTCCAGCA AATAGAATCA GAACGGCACT AAAGAACCTG
TTCCATGCAT TAGATACTAA TTTGTCTGAT CGAGATCCGT ACGATCTTGA AGTAAAGGCA
TTTCCTTATG TAAACGGTGG ACTTTTTAGA GATGACTCTG AGATTCCTAA TTTTACAGAT
GAAACAAAGA GCTTCTTGTT GGATGAAGTT TCTTCCCATA TTAATTGGTC ACAGATTAGC
CCTACTATCT TTGGTGGAAT TTTTGAGTCA ACTCTGAATC CAGAGACTAG ACGTTCCGGT
GGCATGCACT ATACCTCACC AGAAAACATT CATAAGGTAA TTGATCCACT CTTTTTAGAT
GACCTTAAAG AAGAGCTTAA GTCCATCTGT ACAGAAGAGG GAACAACTCC CCGTAAACGT
GAAAATGCTC TTAAGCGTTT CCATGAGAAA ATCTGCTCTC TTACTTTCTT TGATCCTGCT
TGTGGCTCAG GCAACTTCCT TACCGAGACC TACACTTGCC TTCGTAAGTT GGAAGATACG
GTTCTTAATG AGCTTAGAAA AGGCCAGACT GGCTTTAGCC TAGGAGATGA AGAAGAAACA
GGAAAACGCG TTTCTTTGAA TCAGTTCTAT GGCATTGAGA TTAATGATTT TGCTGTAACG
GTTGCTGAGA CTGCACTTTG GATTAGTCGC CTTAAAGCAA ACGGTGAAAC ATCAATGTTC
TACGATGCTG GTGGTGATGA CTTCCCATTA AGTGAAAAAG CTCATATTGT TGAAGGCAAT
GCTCTCCGTA TTGACTGGAA TAGCGTATTG CTAGCAAGTG AATGCAACTA CATTATGGGT
AATCCTCCTT TTGTTGGTTA TTCTAATCAC TCTGCGGAAC AACAAAAAGA TCGAGCAAGC
TTATTCGGTA AGGTGAAAAC TGTTGATTAT GTAGCTTGTT GGTATAAGAA GGCAGCTGAT
TACATTTCCA ATTTTCCGAT TCACTGCGCA TTTGTATCAA CTAACTCAAT CTGCCAAGGG
CAACAAGTAC AGCCTGTATG GGAGCCATTG TTTAACAGTG GTATCCATAT TGATTTTGCA
TGGCAAACGT TTGTATGGAG TTCTGAGGCT TCTATTCAAG CTCATGTTTA CGTGGTAATT
ATTGGTTTCT CACGTTTTGG ATATCAAAAT AAAACACTAT ATCTTAGAGA TGGTGTTAAA
AAATTATGCT CTAACATCAA TGGTTACCTA ATGGACGGAC CTAACATTTT TATAGATAAG
AGAAACAAGC CAATTTGTAA TATACCTCCC ATGATCGGTG GTGGTAAGCC TTCTGATGCC
GGAAACCTGA TTCTGGAACC TTATGAAAGA GACAAGCTTC TTTTAGAGGA ACCTGCGGCA
GAGAAATGGA TTAAGCCATT CTCGATGGGT AATGAATTTA TAAATAATAA AGAGCGCTTC
TGTCTTTGGA TGGTGGGAAT CACACCATCT GAGTTAGCAG GCCTACCTTT GGTATCTAAA
CGTGTGGAAG CTGTGCGAGA AATGCGTCTT GCATCAAGTA AAGCTGCAAC CCGTAAAAAA
GCAGAAACTT CATGGTTATT TGATGAGATA AAAGAACCAA CCAGTGAAAA TTTCATTGTA
ATCCCCGTAG TTTCATCTGA ACGACGTTTT TATGTTCCTA CGGGATTTGT AAATAACGGG
CTAATTCCTG GCAATAAGTT ATTTTTTATC GATGATGCTA CGTTGTATGA TTTTGGAGTA
ATTAACAGTC AATTTCAAAA TGCATGGATG AGAACTGTAG CAGGTCGACT TAAGAGTGAC
TATAGCTACT CCAATACTAT TGTTTATAAC AATTTTGTAT GGCCCGAAGC GACTGTTGAA
CAAAAGGATG CTATTGAAAA GACTGCAAAA GCAATTCTTG ACACAAGATC TAAATACTCT
AATCAATCAT TGGCCGAGTT ATATAATCCT GATAAGATGC CGTCTGATTT GCTTGCTGCG
CATAAAGCTA ATGATGTTGC GGTTGAAGCT GCTTATGGTG TTGATTTCGA TGGTGATGAA
GAAAAGATAG TTGCACATCT TTTCAAACTT TACGCTGAAA AATTAAGATG TTTGACTTAA
 
Protein sequence
MPCDKKELLE FVSRWQGRGY EKGDTQQFWL QLLRTIGYLK VDDVLFEFHV SSGGFIDVWI 
PDAGVLIEQK ALGIDLDKEE LRQGKQKTPL TQALDYVDEL PRLEQPRFVI TCNFSTFRVY
DRDAHGRSQL PNNAFEFTLD ELASHPEYLA FINDPTNSRL EKEKTVSIKA GDLIGKLYDK
LREGYIDPDS EESMHALNVL CVRLVFCLYC EDAGLFGKDA FYNYLKDVPA NRIRTALKNL
FHALDTNLSD RDPYDLEVKA FPYVNGGLFR DDSEIPNFTD ETKSFLLDEV SSHINWSQIS
PTIFGGIFES TLNPETRRSG GMHYTSPENI HKVIDPLFLD DLKEELKSIC TEEGTTPRKR
ENALKRFHEK ICSLTFFDPA CGSGNFLTET YTCLRKLEDT VLNELRKGQT GFSLGDEEET
GKRVSLNQFY GIEINDFAVT VAETALWISR LKANGETSMF YDAGGDDFPL SEKAHIVEGN
ALRIDWNSVL LASECNYIMG NPPFVGYSNH SAEQQKDRAS LFGKVKTVDY VACWYKKAAD
YISNFPIHCA FVSTNSICQG QQVQPVWEPL FNSGIHIDFA WQTFVWSSEA SIQAHVYVVI
IGFSRFGYQN KTLYLRDGVK KLCSNINGYL MDGPNIFIDK RNKPICNIPP MIGGGKPSDA
GNLILEPYER DKLLLEEPAA EKWIKPFSMG NEFINNKERF CLWMVGITPS ELAGLPLVSK
RVEAVREMRL ASSKAATRKK AETSWLFDEI KEPTSENFIV IPVVSSERRF YVPTGFVNNG
LIPGNKLFFI DDATLYDFGV INSQFQNAWM RTVAGRLKSD YSYSNTIVYN NFVWPEATVE
QKDAIEKTAK AILDTRSKYS NQSLAELYNP DKMPSDLLAA HKANDVAVEA AYGVDFDGDE
EKIVAHLFKL YAEKLRCLT