| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0170 |
|---|
| Symbol | |
|---|
| ID | 8413018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 196055 |
|---|
| End bp | 197524 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645021742 |
|---|
| Product | putative sugar-specific permease SgaT/UlaA |
|---|
| Protein accession | YP_003179197 |
|---|
| Protein GI | 257783980 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3037] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.253864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTG TTGAGTTTTT TGTAAACGTG CTATCAACAC CAGCCATCCT AGTTGGCCTA
GTTGCCTTGC TAGGTTTGGC ACTCCAGAAG AAGCCTGTTG AGGACCTTAT TAAAGGTACC
CTTAAAACCA TCGTTGGCTT CCTTGTTCTT TCTGCAGGTG CAAGTTTCTT GCAGTCCGGC
TCTCTCCTTG CCTTTGGCGA AATCTTCAAC TTCGCTTTTG ACATGCAGGG CGTTGTTCCA
AACAATGAAG CCGTTGTTTC CTTGGCACTT GGTGAGTTTG GTCAGGCAAC CGCAATCATC
ATGTGTATCG GTATGGTCCT GAACATTGTT CTCGCACGTT TTTCTCGCTT TAATTACATC
TTCCTCACCG GTCATCACAC CCTTTACATG GCAGCCATGC TTGCTATCAT CCTGCACGTC
GGCGGCCTTT CTGGCTGGAT GCTCTACATC TCCGGCGCAT GCCTGCTTGC TCTGATTATG
GTTCTGTCTC CTGCTTACTG CCAGCCAACT ATGCGCAAGG TTACTGGTAG TGATTCAGTT
GCTCTTGGTC ATTTTGGTGG CGTTGGCTAT TGGCTTGCTG GTATGGTAGG TAAGCTTTTT
GCTTCCGATC GCGAGAATAG CACCGAGAAT ATCAAGTTCT CCAAGCGTCT TATCTTCCTG
CGCGACAACA CCGTTTCTAT TGGTCTGACC ATGATTATTA TGTTTATGGT TATTACTGGC
GTTGCTGTCA GCCGTGGCCT TTTAACCATG GTACCTGCAG GAACTACTGC GGCAGAGTTT
GCTTCTAACC CACAGTATGC TGGTTTCCAG CATCTCGCTG ACCTGTTGAA CATTGGTACT
GAGACCACCA CAAATTGGAT TGTTTGGGCA TTTACTCGCG GTCTCTCCTT TGCTGGCGGT
GTTTACATCA TTTTGTCTGG TGTCCGCCTG ATTATTGGCG AGATTGTTCC TGCATTTAAG
GGTATTGCTC AGAAGCTTGT TCCTGGCGCA AAGCCTGCAA TTGACTGTCC AATCGCATTT
ACCTATGCTC CAAACGCCGT TATTATCGGC TTTTTGAGCT CCTTTGTTGG TGGCATCCTT
GGCCTGCTTA TTCTTGGTGT TATTAACGCA CAGATTGCTG CTGTTGCTCT GATTCTCCCA
GGCGTTGTTC CTCATTTCTT CTGTGGCGCA ACTGCAGGCG TTTTTGGTAA CGCAGAGGGC
GGCATCAAGG GCTGCATCGC CGGCGCATTT GTTCATGGCT TGCTTATTAC CTTCCTGCCT
GCACTGTGCA TGCCAGTCTT CACCCTCATG GGCTTCACTT CCGCTACCTT CTCAGACGCT
GACTTCTCCG TCATGGCTCT GATCTTTGGT AACGTTGCCT TGAACGTTCA GGGTGCAATT
CTTACTGGTA TTTGCGTTCT TTGCTTCTGT CTTCCAATCA TCTTCAACTT TGTTGCTCCT
AAGAAGGCAG TAGAGCAGAA GTCCGAGTAG
|
|---|
| Protein sequence | MPVVEFFVNV LSTPAILVGL VALLGLALQK KPVEDLIKGT LKTIVGFLVL SAGASFLQSG
SLLAFGEIFN FAFDMQGVVP NNEAVVSLAL GEFGQATAII MCIGMVLNIV LARFSRFNYI
FLTGHHTLYM AAMLAIILHV GGLSGWMLYI SGACLLALIM VLSPAYCQPT MRKVTGSDSV
ALGHFGGVGY WLAGMVGKLF ASDRENSTEN IKFSKRLIFL RDNTVSIGLT MIIMFMVITG
VAVSRGLLTM VPAGTTAAEF ASNPQYAGFQ HLADLLNIGT ETTTNWIVWA FTRGLSFAGG
VYIILSGVRL IIGEIVPAFK GIAQKLVPGA KPAIDCPIAF TYAPNAVIIG FLSSFVGGIL
GLLILGVINA QIAAVALILP GVVPHFFCGA TAGVFGNAEG GIKGCIAGAF VHGLLITFLP
ALCMPVFTLM GFTSATFSDA DFSVMALIFG NVALNVQGAI LTGICVLCFC LPIIFNFVAP
KKAVEQKSE
|
|---|
| |