| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0158 |
|---|
| Symbol | |
|---|
| ID | 8413004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 182014 |
|---|
| End bp | 182811 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 645021728 |
|---|
| Product | Cof-like hydrolase |
|---|
| Protein accession | YP_003179185 |
|---|
| Protein GI | 257783968 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAC TCATTGCATC GGACATGGAC GGTACACTTT TGGACCAGAA TTCCGAGGTT
CCGCCAGAGA CATTTGAACT CATTGAAGAG CTGCACAAAC GTGGTGTTCA CTTTGTAGCA
AGCTCTGGTC GTCGTTACGA CACACTGCGT TGGCTGTTTC AGCCGGTTGC AGACAAGATT
GACTACGTGG CTTCTCTTGG TACGCAGGTC TATGTAGAGA ACGAGGTCAT CGACCGCGAG
GTTTTCTCGT CAGCCTCTAT TCGAGCACTG TTTGAGTTGT CGTCTGAGTT TGACTGCATT
CATTTGGTTG TTTATGACCG CACTCATACG TATCTACTGG ACGATCAGAG TTCGTTTGTA
CGTGAGTTGG ACAAAGACTT GCCTAACGCC GAGCGTGTAT TTGATCCGCC TTCACCTGAC
GTTAGTATCA TCAAGGCTGC TGTTTGTTGC GATTCTAGGG CTCGCTCTAT GGATATGGCC
ATGATTCTTG AGCGTGAGAT GGGCGACAGA TTGTCGTTCA TGCCTTCTGG AGAGACGTGG
ATTGACGTGG TACCTCGTGG TGTGAACAAG GCTACAGGAC TTGAGCAGAT TCGCAGGTAT
TACGGCATTT CTCGTAATGA GATTGCTGTT TTTGGCGATT CTATGAACGA TTACGCTATG
CTGCGTTATG CGGGCACTGC TTACGTTATG GACAACGCTC GCTACGCACT TAAAACAATT
GCTACAAAGG TTATTGCTCC TAATACTGAG CAGGGTGTGC AGAAAGAAAT GCGTCGTATT
TTGGAAGAGT TGGCGTAG
|
|---|
| Protein sequence | MIKLIASDMD GTLLDQNSEV PPETFELIEE LHKRGVHFVA SSGRRYDTLR WLFQPVADKI
DYVASLGTQV YVENEVIDRE VFSSASIRAL FELSSEFDCI HLVVYDRTHT YLLDDQSSFV
RELDKDLPNA ERVFDPPSPD VSIIKAAVCC DSRARSMDMA MILEREMGDR LSFMPSGETW
IDVVPRGVNK ATGLEQIRRY YGISRNEIAV FGDSMNDYAM LRYAGTAYVM DNARYALKTI
ATKVIAPNTE QGVQKEMRRI LEELA
|
|---|
| |