| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0124 |
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| Symbol | |
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| ID | 8412968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 138305 |
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| End bp | 141748 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645021692 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003179151 |
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| Protein GI | 257783934 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00760781 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.18165 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTTATTA ACAGAGTTGC AGCTCAATTA CTGAGTGCAC CCGAGTTAGA GAAGCTGAAG
CGGGAGCTTT CATGTGGATC AGATGCCACA CTGTCCCTCT CGCAAAGCGC TCGTCCGCTA
ATGTTGGCCG CGCTCTGGTC GCAGAACCCT CGTCCCTGCT TGTTGGTTGT TGCGGGAGAG
GACGCCGCAG ATCGTACAGC ACGTTCGCTT GCTGCGTGGC TGGGTAACGA CGCTGTGTTA
CGTTATCCCA ACCGTAAGGA TTATCCCTGG TCAGATGCCA CTCCAGATGA CGCCATCATT
GGAGCTAGGT GTCGCGCTAT CGCCAAGCTT TCCGCTGGCG AGAAGGTCAT TGTAGTTGCA
AGTGCCCATG CGCTGATGCG CAGAGTTCCC CCTGTTGGTT CAGGCTATTT TCTTCCTGCA
ACGTTTACTG TTGGCGACGA CGTTCCTTTT GAGGACGTAG CCTCACTGCT TGTGGGCATG
GGATACGCTG ATACGGGCGA GGTAGATGCG CCAGGCACCT TCCACATTCA CGGCGATACG
GTTGATATCT TCCCAGCTCA AGCTACAAGT CCTGTACGCA TTGAGTTCTT CGGAGACGAG
ATTGATCGCA TCAGGCGCAT GGTGGCAGCT ACCGGTCAGA CCATTGGTGC CATTGATGAG
GTCACCGTTG CCCCAGCTAG AGAGCTTGCA TTTACTAAAG AGGCTATTCG TCGTGCAGAG
GAAGCACTTT ATACGCGTGC ACAAGAAAAC TCTGCAATTG CTGCTGACCT GGAACTTATT
CAGCGCGGAG CTCAGGCTCC TGCGCTTGAG CGTTATTTGC CTGTGCTGTA TGGAGGCACT
GCCAGCCCGC TTGAGCATAT TTCTTCAGAA ACATTGGTAG TTCTTGCAGA GCCTCGTTCG
TTGTTTGATG ACTGCCAGCG TGCCTTTGAC GAGATTTCTT CATCTGCAGC AGCATCAAAA
GTGAAACTAG ATGGCCTGTA TACAGATCCA AAGGCTATGG ACTTTGGCTC GCAGCAACGC
CTGTCTTTCT CGTCACTTTT ACGCACGGGT GCTGCGGTAA CGTCGGAGCT TTCTGTGGTA
CAGCCGTCTA TTGCGGGATC AGACACAAAG CTTTTGGGTC GCGTGAGGCA GCTGGTGCAA
GACCGCGACG CGGTGGTGTT TGCGGTTCCA GATCGCGCAG CTCGTGAGCA TCTTAAGTTG
CTTTTCTCGG ACGAGTCCAT TCCGTTTGAG GAGTCGTTAG GAACGTCGCT TGAAAATGAA
CCAGACCAAA ACGGTGTCTA TGTGCCACTT AAGCGAGGTC GTGTCACATT TACCGACGCA
CCCGTTCCTG CAGGAATCAT CATTCCAACA GCCAATCTAT CAGTGCTTTC TGTCTCAGAT
CTGACGGCAA GGAGCGCTCG CAATAAGAAG CGTTCCAAGC GCATTGACCC CACAACAGTG
ACGTTCCCGT TTAAGCCGGG CGATTACGTT GTTCATGCAA CGCATGGTAT TGCACACTTT
ACGGCCATTG TGCGCCAAGA AGTCGCAGGT AGAGAACGTG ATTATTTTCT TCTTGAATAC
GCCAATGACG ATAAACTCTA TGTGCCTCTG GAGCAAGTTG ACCGCATTAC GCGCTATGTG
GGACCTGACG GTAACAATCC GCGCTTGACC AGGCTTAACA CGGCAGATTG GTCGCGTGCT
ACTAACAAGG CAAGAAAGTC TGCCAAAAAG TTGGCATTTG ACCTGGTAGA CCTCTACACA
CGTCGCGCTT CGGTGCCGGG TTATGCGTTC TCACTGGATA CTCCTGCTCA GGAAGAGATG
GAGTCTAGTT TTCCGTATCA GTTAACGCCA GACCAAGAAA GTGCTGTTGC AGACATTAAG
CTGGACATGG AAGCGCGTAA GCCTATGGAT CGATTGCTTT GCGGTGACGT GGGCTTTGGA
AAGACAGAGG TGGCGCTTCG AGCTGCGTTT AAGGCGTGTC AGGATGCTCG TCAGGTCATG
ATTTTGTGCC CAACAACTAT TTTGGCGCAG CAGCACTACG AGACGTTCTT CTCGCGATTT
GCTCCGTTTG ATTTGAAGGT AAGTGTACTT TCGCGTTTTG TTACACCTGC TCAGCAGCGA
AAGGCGCTTG AGGGATTTGC AGACGGAACC ATAGATGTGC TGGTAGGAAC ACACAGACTG
CTCTCCGCAG ACGTAAATCC TCACGACTTG GGTCTTGTTA TTATCGACGA GGAGCAGCGC
TTTGGTGTGC AGCACAAAGA GCAACTCAAG AACATGCGCG AGCAGGTAGA CGTGCTGACG
CTTTCGGCAA CACCTATTCC GCGTACTATG CAGATGGCCA TGAGTGGTGT GCGCGACATG
AGCCTGATTC TGACGCCGCC GCCTGGTAGA AAGCCTGTTC AGGTGACGGT TGGCGAGTAC
AACCCAGATC TTGTTTCCGC AGCAATTAGA AGTGAGCTGG AGCGAGAAGG TCAGGTGTAC
TACGTGTCCA ATCGCGTGAC TACTATTGAT GAGGCGGTGG CTCGCGTAGA AGAGGCTGCA
CCAGAGGCTC GCGTGGGCGT GGCTCACGGC CAAATGAGCG CTCGCGAGGT AGAAAACGTC
ATGCTTGCCT TCCAGGAGCA CGAGATTGAT GTTTTGGTAG CCACAACCAT CATCGAGTCC
GGTATTGATA ACTCGCATAC CAACACGTTG ATTATCGAGG ACTCACAACG TCTGGGATTG
GCTCAGTTGT ACCAGCTTAA AGGTCGTGTT GGCCGTGGTA GACAACAGGC GTACGCGTAC
TTCATGTTCC CGGCAGAGCT GCCGTTGACT GAAGAGGCAA CCGAGCGTCT GACTGCAATC
AACGAGTTCC AGGATTTGGG TAGCGGCATG CGTATTGCCA TGCGCGATCT GGAGATTAGA
GGTGCCGGCT CTCTTATGGG CGCTGAGCAA CACGGAAATC TTTCCAGTGT TGGCTTTGAT
CTCTTTACAC AGATGCTGGG CGAGGCGGTT GCTGAGGCTC GTGGTGAGTC TGCAGAGTTA
GAGCAGACTG AAGTAACTAT CAATCTGCCT GCAGATTTCT TCCTTGATGA GGACTATCTG
CCAGAAGTTG ACCGACGTGT TTTGGTGTAT CGTCGTCTTG CCGCAGCTAC AGAGCTTTCC
GATATAGACG CTCTTCAGCA AGATACCGAG AATAGCTTTG GAGCCCTGCC TCTTGCGGGT
AAGAACTTGT TTGATCGTGC TCGTGTGCGC ATTCGTGCGC AGCGTTTGGG CGCAACGTCA
GTAAGCCTAA CAAATGGACG ACTGGTATAT TTGGGTGTAG AAATTCCTCG CGAACAAGCC
CTTAAGTTGA AGGGTCGCGG TGCTATTGTG TATCCAAAGT CGCATAAGCT GGCATATCCG
TTCCACCGAA ATGAAGAGCA GCTGATGCCC GCCGCCCTAG GAGTTCTTGA AGAACTTGGC
GGCGACGACG AGGTTGAGGA GTAA
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| Protein sequence | MFINRVAAQL LSAPELEKLK RELSCGSDAT LSLSQSARPL MLAALWSQNP RPCLLVVAGE
DAADRTARSL AAWLGNDAVL RYPNRKDYPW SDATPDDAII GARCRAIAKL SAGEKVIVVA
SAHALMRRVP PVGSGYFLPA TFTVGDDVPF EDVASLLVGM GYADTGEVDA PGTFHIHGDT
VDIFPAQATS PVRIEFFGDE IDRIRRMVAA TGQTIGAIDE VTVAPARELA FTKEAIRRAE
EALYTRAQEN SAIAADLELI QRGAQAPALE RYLPVLYGGT ASPLEHISSE TLVVLAEPRS
LFDDCQRAFD EISSSAAASK VKLDGLYTDP KAMDFGSQQR LSFSSLLRTG AAVTSELSVV
QPSIAGSDTK LLGRVRQLVQ DRDAVVFAVP DRAAREHLKL LFSDESIPFE ESLGTSLENE
PDQNGVYVPL KRGRVTFTDA PVPAGIIIPT ANLSVLSVSD LTARSARNKK RSKRIDPTTV
TFPFKPGDYV VHATHGIAHF TAIVRQEVAG RERDYFLLEY ANDDKLYVPL EQVDRITRYV
GPDGNNPRLT RLNTADWSRA TNKARKSAKK LAFDLVDLYT RRASVPGYAF SLDTPAQEEM
ESSFPYQLTP DQESAVADIK LDMEARKPMD RLLCGDVGFG KTEVALRAAF KACQDARQVM
ILCPTTILAQ QHYETFFSRF APFDLKVSVL SRFVTPAQQR KALEGFADGT IDVLVGTHRL
LSADVNPHDL GLVIIDEEQR FGVQHKEQLK NMREQVDVLT LSATPIPRTM QMAMSGVRDM
SLILTPPPGR KPVQVTVGEY NPDLVSAAIR SELEREGQVY YVSNRVTTID EAVARVEEAA
PEARVGVAHG QMSAREVENV MLAFQEHEID VLVATTIIES GIDNSHTNTL IIEDSQRLGL
AQLYQLKGRV GRGRQQAYAY FMFPAELPLT EEATERLTAI NEFQDLGSGM RIAMRDLEIR
GAGSLMGAEQ HGNLSSVGFD LFTQMLGEAV AEARGESAEL EQTEVTINLP ADFFLDEDYL
PEVDRRVLVY RRLAAATELS DIDALQQDTE NSFGALPLAG KNLFDRARVR IRAQRLGATS
VSLTNGRLVY LGVEIPREQA LKLKGRGAIV YPKSHKLAYP FHRNEEQLMP AALGVLEELG
GDDEVEE
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