| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0123 |
|---|
| Symbol | |
|---|
| ID | 8412967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 137433 |
|---|
| End bp | 138104 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645021691 |
|---|
| Product | endonuclease III |
|---|
| Protein accession | YP_003179150 |
|---|
| Protein GI | 257783933 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0177] Predicted EndoIII-related endonuclease |
|---|
| TIGRFAM ID | [TIGR01083] endonuclease III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000215731 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.253004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGAG AATCAAAGAA AACCAAGGTA GAACGCGGTG TTGAGCTATG TCGACGCATG
CACAAGCTCT ATCCAAGCGT CCAAAGTGCG CTAGATTACC ATGATGCGTT TACCCTGCTC
ATAAGTGTTA TGCTTTCGGC ACAGACTACT GATGCCGCAG TAAATAAAGT CACACCCGAG
CTATTCCGCC GCTGGCCAGA CGCGCCTTCC ATGGCAGCTG CCAATATTGT CGAAGTGGGA
GAGGTCATCC AGACCATCGG CTTCTGGCGC GCAAAGGCTA AGCACTGCGT GGAGACTGCA
CAGATTCTGC TAACAGAATA CGGTGGAGAA GTTCCAGGAA CCATGGAAGA CCTTGTCACA
CTCCCGGGCG TTGGCCGAAA GACTGCAAAC ATTGTCCTCA ACAAAATGTT TAACGTGGTA
GATGGTATTG CAGTGGACAC GCACGTGTAC AGAATCTCCA AGCGCATGCG CTTGAGCTCG
GCTTCCACGC CGTTAGCTGC CGAGAAGGAC CTGCTCGCGC TTCTCCCCCA TGAGCTCTGG
AAAGACGTCA ATGAAGAGTG GATTCATTTT GGGCGAGAAA CCTGCACTGC CCGCAACCCC
AAGTGCGTCG GCTGCCCCAT GAGCGACATC TGTCCCTCCT ATGAACAGCC CAACCGCTGG
TTCAAGGGAT AG
|
|---|
| Protein sequence | MPRESKKTKV ERGVELCRRM HKLYPSVQSA LDYHDAFTLL ISVMLSAQTT DAAVNKVTPE
LFRRWPDAPS MAAANIVEVG EVIQTIGFWR AKAKHCVETA QILLTEYGGE VPGTMEDLVT
LPGVGRKTAN IVLNKMFNVV DGIAVDTHVY RISKRMRLSS ASTPLAAEKD LLALLPHELW
KDVNEEWIHF GRETCTARNP KCVGCPMSDI CPSYEQPNRW FKG
|
|---|
| |